GSM2328786 Phase_S NA GSE87356 whole cell S phase Rfa1/BrdU ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed rtt105d_RPA-eSPAN_S-phase-96-16degreeC bd_0_1_2_6_sc3 UsingSRR GSM2328785 Phase_S NA GSE87356 whole cell S phase Rfa1/BrdU ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed rtt105d_RPA-eSPAN_S-phase-72-16degreeC bd_0_1_2_6_sc3 UsingSRR GSM2328784 Phase_S NA GSE87356 whole cell S phase Rfa1 ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed rtt105d_RPA-ChIP_S-phase-96-16degreeC bd_0_1_2_6_sc3 UsingSRR GSM2328783 Phase_S NA GSE87356 whole cell S phase Rfa1 ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed rtt105d_RPA-ChIP_S-phase-72-16degreeC bd_0_1_2_6_sc3 UsingSRR GSM2328782 Phase_S NA GSE87356 whole cell S phase BrdU (GE Healthcare(Catalog number ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed rtt105d_BrdU-IP_S-phase-96-16degreeC bd_0_1_2_6_sc3 UsingSRR GSM2328781 Phase_S NA GSE87356 whole cell S phase BrdU (GE Healthcare(Catalog number ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed rtt105d_BrdU-IP_S-phase-72-16degreeC bd_0_1_2_6_sc3 UsingSRR GSM2328778 Phase_S NA GSE87356 whole cell S phase Rfa1/BrdU ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed WT_RPA-eSPAN_S-phase-96-16degreeC bd_0_1_2_6_sc3 UsingSRR GSM2328777 Phase_S NA GSE87356 whole cell S phase Rfa1/BrdU ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed WT_RPA-eSPAN_S-phase-72-16degreeC bd_0_1_2_6_sc3 UsingSRR GSM2328776 Phase_S NA GSE87356 whole cell S phase Rfa1 ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed WT_RPA-ChIP_S-phase-96-16degreeC bd_0_1_2_6_sc3 UsingSRR GSM2328775 Phase_S NA GSE87356 whole cell S phase Rfa1 ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed WT_RPA-ChIP_S-phase-72-16degreeC bd_0_1_2_6_sc3 UsingSRR GSM2328774 Phase_S NA GSE87356 whole cell S phase BrdU (GE Healthcare(Catalog number ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed WT_BrdU-IP_S-phase-96-16degreeC bd_0_1_2_6_sc3 UsingSRR GSM2328773 Phase_S NA GSE87356 whole cell S phase BrdU (GE Healthcare(Catalog number ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed WT_BrdU-IP_S-phase-72-16degreeC bd_0_1_2_6_sc3 UsingSRR GSM2887531 Phase_S NA GSE87356 whole cell S phase Rfa2 ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed Rfa2_WT_16dC_ChIP bw_0_1_2_4_sc3 GSM2887531_y1466.bw GSM2705876 Phase_S NA GSE101536 whole cell S phase MCM6_16dC_ChIP ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed MCM6_16dC_ChIP_rep2 bw_0_1_2_4_sc3 GSM2705876_M16C-r.bw GSM2705873 Phase_S NA GSE101536 whole cell S phase CDC45rtt105d_16dC_ChIP ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed CDC45rtt105d_16dC_ChIP_rep2 bw_0_1_2_4_sc3 GSM2705873_CR16C-r.bw GSM2705870 Phase_S NA GSE101536 whole cell S phase CDC45_16dC_ChIP ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed CDC45_16dC_ChIP_rep2 bw_0_1_2_4_sc3 GSM2705870_C16C-r.bw GSM2705855 Phase_S NA GSE101536 whole cell S phase MCM6rtt105d_16dC_ChIP ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed MCM6rtt105d_16dC_ChIP_rep1 bw_0_1_2_4_sc3 GSM2705855_MR16C.bw GSM2705852 Phase_S NA GSE101536 whole cell S phase MCM6_16dC_ChIP ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed MCM6_16dC_ChIP_rep1 bw_0_1_2_4_sc3 GSM2705852_M16C.bw GSM2705849 Phase_S NA GSE101536 whole cell S phase CDC45rtt105d_16dC_ChIP ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed CDC45rtt105d_16dC_ChIP_rep1 bw_0_1_2_4_sc3 GSM2705849_CR16C.bw GSM2705846 Phase_S NA GSE101536 whole cell S phase CDC45_16dC_ChIP ChIP-Seq sacCer3 After quality control, samples were mapped by bowtie2 with parameters -k 1 -N 1 --very-sensitive --no-mixed CDC45_16dC_ChIP_rep1 bw_0_1_2_4_sc3 GSM2705846_C16C.bw GSM1909517 Phase_S NA GSE74090 Input DNA S-phase time course wt yeast derived from W303 with the h-ENT1 nucleotide transporter and HPV-Thymidine kinase MNase-Seq Illumina OLB-1.8.0/CASAVA_v1.7.0 were used for base calling. Input DNA S-phase time course 3 bd_0_1_2_6_sc3 UsingSRR GSM1909516 Phase_S NA GSE74090 Input DNA S-phase time course wt yeast derived from W303 with the h-ENT1 nucleotide transporter and HPV-Thymidine kinase MNase-Seq Illumina OLB-1.8.0/CASAVA_v1.7.0 were used for base calling. Input DNA S-phase time course 2 bd_0_1_2_6_sc3 UsingSRR GSM1909515 Phase_S NA GSE74090 Input DNA S-phase time course wt yeast derived from W303 with the h-ENT1 nucleotide transporter and HPV-Thymidine kinase MNase-Seq Illumina OLB-1.8.0/CASAVA_v1.7.0 were used for base calling. Input DNA S-phase time course 1 bd_0_1_2_6_sc3 UsingSRR GSM1314110 Phase_S NA GSE54377 MN_Scerevisiae_WT_S-phase MNase-Seq Alignment: bowtie 0.12.7 MN_Scerevisiae_WT_S-phase bd_0_1_2_6_sc3 UsingSRR