GSM3122294	Liver	GSM3122287	GSE113877		Wistar Rat liver			 Wistar	H3K4me1	ChIP-Seq	Rn6	Reads mapped to RN6 rat genome build using BWA (v0.7.12; default settings).	H3K4me1_Chipseq_WIS_female_3	bd_0_1_2_6_rn5	UsingSRR
GSM3122292	Liver	GSM3122287	GSE113877		Wistar Rat liver			 Wistar	H3K4me1	ChIP-Seq	Rn6	Reads mapped to RN6 rat genome build using BWA (v0.7.12; default settings).	H3K4me1_Chipseq_WIS_female_1	bd_0_1_2_6_rn5	UsingSRR
GSM3122293	Liver	GSM3122287	GSE113877		Wistar Rat liver			 Wistar	H3K4me1	ChIP-Seq	Rn6	Reads mapped to RN6 rat genome build using BWA (v0.7.12; default settings).	H3K4me1_Chipseq_WIS_female_2	bd_0_1_2_6_rn5	UsingSRR
GSM3122291	Liver	GSM3122287	GSE113877		Wistar Rat liver			 Wistar	H3K27ac	ChIP-Seq	Rn6	Reads mapped to RN6 rat genome build using BWA (v0.7.12; default settings).	H3K27ac_Chipseq_WIS_female_3	bd_0_1_2_6_rn5	UsingSRR
GSM3122290	Liver	GSM3122287	GSE113877		Wistar Rat liver			 Wistar	H3K27ac	ChIP-Seq	Rn6	Reads mapped to RN6 rat genome build using BWA (v0.7.12; default settings).	H3K27ac_Chipseq_WIS_female_2	bd_0_1_2_6_rn5	UsingSRR
GSM3122289	Liver	GSM3122287	GSE113877		Wistar Rat liver			 Wistar	H3K27ac	ChIP-Seq	Rn6	Reads mapped to RN6 rat genome build using BWA (v0.7.12; default settings).	H3K27ac_Chipseq_WIS_female_1	bd_0_1_2_6_rn5	UsingSRR
GSM3122286	Liver	GSM3122279	GSE113877		Wistar Rat liver			 Wistar	H3K4me1	ChIP-Seq	Rn6	Reads mapped to RN6 rat genome build using BWA (v0.7.12; default settings).	H3K4me1_Chipseq_WIS_male_3	bd_0_1_2_6_rn5	UsingSRR
GSM3122285	Liver	GSM3122279	GSE113877		Wistar Rat liver			 Wistar	H3K4me1	ChIP-Seq	Rn6	Reads mapped to RN6 rat genome build using BWA (v0.7.12; default settings).	H3K4me1_Chipseq_WIS_male_2	bd_0_1_2_6_rn5	UsingSRR
GSM3122284	Liver	GSM3122279	GSE113877		Wistar Rat liver			 Wistar	H3K4me1	ChIP-Seq	Rn6	Reads mapped to RN6 rat genome build using BWA (v0.7.12; default settings).	H3K4me1_Chipseq_WIS_male_1	bd_0_1_2_6_rn5	UsingSRR
GSM3122283	Liver	GSM3122279	GSE113877		Wistar Rat liver			 Wistar	H3K27ac	ChIP-Seq	Rn6	Reads mapped to RN6 rat genome build using BWA (v0.7.12; default settings).	H3K27ac_Chipseq_WIS_male_3	bd_0_1_2_6_rn5	UsingSRR
GSM3122282	Liver	GSM3122279	GSE113877		Wistar Rat liver			 Wistar	H3K27ac	ChIP-Seq	Rn6	Reads mapped to RN6 rat genome build using BWA (v0.7.12; default settings).	H3K27ac_Chipseq_WIS_male_2	bd_0_1_2_6_rn5	UsingSRR
GSM3122281	Liver	GSM3122279	GSE113877		Wistar Rat liver			 Wistar	H3K27ac	ChIP-Seq	Rn6	Reads mapped to RN6 rat genome build using BWA (v0.7.12; default settings).	H3K27ac_Chipseq_WIS_male_1	bd_0_1_2_6_rn5	UsingSRR
GSM2339403	Liver	NA	GSE87730		liver from animals with ligated bile duct, 1 day after surgery				FXR 	ChIP-Seq	rn5	Reads were aligned to the rat genome (rn5) using the BWA algorithm (default settings). Duplicate reads were removed and only uniquely mapped reads (mapping quality ¡Ý 25) were used for further analysis. Alignments were extended in silico at their 3¡¯-ends to a length of 200 bp, which is the average genomic fragment length in the size-selected library, and assigned to 32-nt bins along the genome.	BDL_1d_FXR	bd_0_1_2_7_rn5	GSM2339403_1_BDL-24hr_FXR_peaks.xls.gz
GSM2339402	Liver	NA	GSE87730		liver from animals with sham surgery, 1 day after surgery				FXR 	ChIP-Seq	rn5	Reads were aligned to the rat genome (rn5) using the BWA algorithm (default settings). Duplicate reads were removed and only uniquely mapped reads (mapping quality ¡Ý 25) were used for further analysis. Alignments were extended in silico at their 3¡¯-ends to a length of 200 bp, which is the average genomic fragment length in the size-selected library, and assigned to 32-nt bins along the genome.	sham_1d_FXR	bd_0_1_2_7_rn5	GSM2339402_2_sham-24hr_FXR_peaks.xls.gz
GSM2339397	Liver	NA	GSE87730		liver from animals with ligated bile duct, 1 day after surgery				HNF 	ChIP-Seq	rn5	Reads were aligned to the rat genome (rn5) using the BWA algorithm (default settings). Duplicate reads were removed and only uniquely mapped reads (mapping quality ¡Ý 25) were used for further analysis. Alignments were extended in silico at their 3¡¯-ends to a length of 200 bp, which is the average genomic fragment length in the size-selected library, and assigned to 32-nt bins along the genome.	BDL_1d_HNF	bd_0_1_2_7_rn5	GSM2339397_07_BDL-24hr_HNF-1_peaks.xls.gz
GSM2339396	Liver	NA	GSE87730		liver from animals with sham surgery, 1 day after surgery				HNF 	ChIP-Seq	rn5	Reads were aligned to the rat genome (rn5) using the BWA algorithm (default settings). Duplicate reads were removed and only uniquely mapped reads (mapping quality ¡Ý 25) were used for further analysis. Alignments were extended in silico at their 3¡¯-ends to a length of 200 bp, which is the average genomic fragment length in the size-selected library, and assigned to 32-nt bins along the genome.	sham_1d_HNF	bd_0_1_2_7_rn5	GSM2339396_08_sham-24hr_HNF-1_peaks.xls.gz
GSM2339391	Liver	NA	GSE87730		liver from animals with ligated bile duct, 1 day after surgery				Sp1 	ChIP-Seq	rn5	Reads were aligned to the rat genome (rn5) using the BWA algorithm (default settings). Duplicate reads were removed and only uniquely mapped reads (mapping quality ¡Ý 25) were used for further analysis. Alignments were extended in silico at their 3¡¯-ends to a length of 200 bp, which is the average genomic fragment length in the size-selected library, and assigned to 32-nt bins along the genome.	BDL_1d_Sp1	bd_0_1_2_7_rn5	GSM2339391_13_BDL-24hr_Sp1_peaks.xls.gz
GSM2339390	Liver	NA	GSE87730		liver from animals with sham surgery, 1 day after surgery				Sp1 	ChIP-Seq	rn5	Reads were aligned to the rat genome (rn5) using the BWA algorithm (default settings). Duplicate reads were removed and only uniquely mapped reads (mapping quality ¡Ý 25) were used for further analysis. Alignments were extended in silico at their 3¡¯-ends to a length of 200 bp, which is the average genomic fragment length in the size-selected library, and assigned to 32-nt bins along the genome.	sham_1d_Sp1	bd_0_1_2_7_rn5	GSM2339390_14_sham-24hr_Sp1_peaks.xls.gz
GSM2339385	Liver	NA	GSE87730		liver from animals with ligated bile duct, 1 day after surgery				cJun 	ChIP-Seq	rn5	Reads were aligned to the rat genome (rn5) using the BWA algorithm (default settings). Duplicate reads were removed and only uniquely mapped reads (mapping quality ¡Ý 25) were used for further analysis. Alignments were extended in silico at their 3¡¯-ends to a length of 200 bp, which is the average genomic fragment length in the size-selected library, and assigned to 32-nt bins along the genome.	BDL_1d_cJun	bd_0_1_2_7_rn5	GSM2339385_19_BDL-24hr_cJun_peaks.xls.gz
GSM2339384	Liver	NA	GSE87730		liver from animals with sham surgery, 1 day after surgery				cJun 	ChIP-Seq	rn5	Reads were aligned to the rat genome (rn5) using the BWA algorithm (default settings). Duplicate reads were removed and only uniquely mapped reads (mapping quality ¡Ý 25) were used for further analysis. Alignments were extended in silico at their 3¡¯-ends to a length of 200 bp, which is the average genomic fragment length in the size-selected library, and assigned to 32-nt bins along the genome.	sham_1d_cJun	bd_0_1_2_7_rn5	GSM2339384_20_sham-24hr_cJun_peaks.xls.gz