GSM281695 GSE11172 ES_H3K4me1_ChIPSeq H3K4me1 GSM307138 GSE11724 sox2_mES_rep1 sox2 GSM307140 GSE11724 Nanog_mES_rep1 Nanog GSM307154 GSE11724 WCE_mES_rep2 input GSM307145 GSE11724 suz12_rep2_1 suz12 GSM307141 GSE11724 Nanog_mES_rep2 Nanog GSM307139 GSE11724 sox2_mES_rep2 sox2 GSM307142 GSE11724 Tcf3_mES_rep1 Tcf3 GSM307143 GSE11724 Tcf3_mES_rep2 Tcf3 GSM307155 GSE11724 WCE_mES_rep1 input GSM307144 GSE11724 suz12_mES_repl suz12 GSM307137 GSE11724 oct4_mES_rep1 oct4 GSM307623 GSE12241 ES_RPol2_ChIPSeq POL2 GSM307625 GSE12241 ES_WCE_ChIPSeq input GSM307624 GSE12241 ES_H3_ChIPSeq H3 GSM318444 GSE12680 RNAP2_mES_rep1 POL2 GSM327669 GSE13084 mES_RING1B_ChIPSeq RING1B GSM327668 GSE13084 mES_EZH2_ChIPSeq EZH2 GSM327667 GSE13084 mES_SUZ12_ChIPSeq SUZ12 GSM459273 GSE18371 SetDB1_ChIP_Seq_rep_1 SetDB1 GSM459283 GSE18371 WCE_mES_ChIP_Seq_rep_1 input GSM459275 GSE18371 SetDB1_ChIP_Seq_rep_3 SetDB1 GSM459274 GSE18371 SetDB1_ChIP_Seq_rep_2 SetDB1 GSM462292 GSE18588,GSE21202 mouse_ES_input input GSM462291 GSE18588,GSE21202 mouse_ES_KDM2A KDM2A GSM465677 GSE18699 ES_Illumina.WCE input GSM515667 GSE20485,GSE20530 PolII_Nterm_shControl1_ChIP_Seq POL2 GSM515674 GSE20485,GSE20530 PolII_Nterm_shControl2_ChIP_Seq POL2 GSM515662 GSE20485,GSE20530 PolII_Ser5P_ChIP_Seq POL2 GSM515670 GSE20485,GSE20530 PolII_Nterm_DMSO1hr_ChIP_Seq POL2 GSM515668 GSE20485,GSE20530 PolII_Nterm_shNelfA_ChIP_Seq POL2 GSM515672 GSE20485,GSE20530 PolII_Nterm_DMSO6hr_ChIP_Seq POL2 GSM515673 GSE20485,GSE20530 PolII_Nterm_10058F4_ChIP_Seq POL2 GSM515675 GSE20485,GSE20530 PolII_Nterm_shcMyc_ChIP_Seq POL2 GSM515671 GSE20485,GSE20530 PolII_Nterm_Flavopiridol_ChIP_Seq POL2 GSM515663 GSE20485,GSE20530 PolII_Ser2P_ChIP-Seq POL2 GSM515669 GSE20485,GSE20530 PolII_Nterm_shSpt5_ChIP_Seq POL2 GSM515664 GSE20485,GSE20530 NelfA_ChIP_Seq NelfA GSM515665 GSE20485,GSE20530 Spt5_ChIP_Seq Spt5 GSM515666 GSE20485,GSE20530,GSE51334 Ctr9_ChIP_Seq Ctr9 GSM539541 GSE21614,GSE21621 Smad3 - ESC Smad3 GSM539549 GSE21614,GSE21621 Smad2/3 Activin - ESC Smad2-3 GSM539542 GSE21614,GSE21621 Smad3 Activin - ESC Smad3 GSM545205 GSE21917 RNA Polymerase II phospho Ser7 CTD ChIPseq in mES cells POL2 mm8, GSM555160 GSE22303 ChIP-Seq for TBP in mES cells (B2) TBP GSM555162 GSE22303 ChIP-Seq for TBP in mES cells (B6) TBP GSM560346 GSE22557,GSE22562 mES_Med12_051809_ChipSeq Med12 GSM560350 GSE22557,GSE22562 ChIP-Seq for Nipbl in mES cells (rep 2) Nipbl GSM560348 GSE22557,GSE22562 ChIP-Seq for Med1 in mES cells (rep 2) Med1 GSM560342 GSE22557,GSE22562 ChIP-Seq for Smc1 in mES cells (rep 2) Smc1 GSM560347 GSE22557,GSE22562 ChIP-Seq for Med1 in mES cells Med1 GSM560343 GSE22557,GSE22562 ChIP-Seq for Smc3 in mES cells (rep 2) Smc3 GSM560344 GSE22557,GSE22562 ChIP-Seq for Smc3 in mES cells Smc3 GSM560357 GSE22557,GSE22562 WCE in mES cells input GSM560349 GSE22557,GSE22562 ChIP-Seq for Nipbl in mES cells Nipbl GSM560345 GSE22557,GSE22562 ChIP-Seq for Med12 in mES cells (rep 2) Med12 GSM560341 GSE22557,GSE22562 ChIP-Seq for Smc1 in mES cells Smc1 GSM587480 GSE23830 h3_mesc_sb_ChipSeq H3, Abcam, 887601 GSM587479 GSE23830 h3_mesc_ChipSeq H3, Abcam, 887601 GSM594601 GSE24164,GSE24165 ChIP-Seq for p300 in ES (129JAE-C57/B6) cells 2 EP300 GSM594599 GSE24164,GSE24165 Seq for whole cell extract from ES (129JAE-C56/B6) cells input GSM594600 GSE24164,GSE24165 ChIP-Seq for p300 in ES (129JAE-C57/B6) cells 1 EP300 GSM594582 GSE24164,GSE24165 ChIP-Seq for H3K4me1 in ES (129JAE-C57/B6) cells containing the dox inducible 4f2a transgene (carey et al.,2010) H3K4me1 GSM594580 GSE24164,GSE24165 ChIP-Seq for H3 in ES (129JAE-C57/B6) cells H3 GSM594579 GSE24164,GSE24165 ChIP-Seq for H3K27ac in ES (129JAE-C57/B6) cells 2 H3K27ac GSM594577 GSE24164,GSE24165 ChIP-Seq for H3K4me1 in ES (129JAE-C57/B6) cells H3K4me1 GSM594578 GSE24164,GSE24165 ChIP-Seq for H3K27ac in ES (129JAE-C57/B6) cells 1 H3K27ac GSM594583 GSE24164,GSE24165 ChIP-Seq for H3K4me1 in ES (C57/B6 inbred) cells H3K4me1 GSM628031 GSE25197 YY1 ChIPSeq in V6.5 murine ES cells YY1 GSM656323 GSE26658 Total RNA Pol2 ChIP-seq in mES cells with shSpt5 with flavopiridol POL2 GSM656322 GSE26658 Total RNA Pol2 ChIP-seq in mES cells with shSpt4 with flavopiridol POL2 GSM656325 GSE26658 Total RNA Pol2 ChIP-seq in mES cells with shControl with flavopiridol POL2 GSM656324 GSE26658 Total RNA Pol2 ChIP-seq in mES cells with shNelfE with flavopiridol POL2 GSM656526 GSE26680 MCAF1 ChIP-Seq in mES cells MCAF1 GSM656525 GSE26680 REST ChIP-Seq in mES cells REST GSM656523 GSE26680 Ring1b ChIP-Seq in mES cells Ring1b GSM665995 GSE27037 MESC_GROseq_Rep2 GRO-seq GSM665994 GSE27037 MESC_GROseq_Rep1 GRO-seq GSM665996 GSE27037 MESC_GROseq_Rep3 GRO-seq GSM845235 GSE27841,GSE27844 CoREST_ChipSeq CoREST GSM845243 GSE27841,GSE27844 H3K4me1 C646 rep2 H3K4me1 GSM687282 GSE27841,GSE27844 mES_LSD1 Lsd1 GSM845237 GSE27841,GSE27844 H3K27ac rep2 H3K27ac GSM687285 GSE27841,GSE27844 mES_REST REST GSM687283 GSE27841,GSE27844 Mi-2 v6.5_ChipSeq Mi-2b GSM845236 GSE27841,GSE27844 H3K27ac rep1 H3K27ac GSM845240 GSE27841,GSE27844 H3K27ac C646 rep1 H3K27ac GSM687281 GSE27841,GSE27844 ChIP-Seq for Lsd1 in mES cells Lsd1 GSM845242 GSE27841,GSE27844 H3K4me1 C646 rep1 H3K4me1 GSM845238 GSE27841,GSE27844 H3K4me1 rep1 H3K4me1 GSM845239 GSE27841,GSE27844 H3K4me1 rep2 H3K4me1 GSM845241 GSE27841,GSE27844 H3K27ac C646 rep2 H3K27ac GSM687284 GSE27841,GSE27844 mES_Mi-2b Mi-2b GSM766452 GSE30919 CapH2_Ab1_DMSO_NOT_NORMALIZED_mES_MM8 CAPH2 GSM766454 GSE30919 Smc1_DMSO_NOT_NORMALIZED_mES_MM8 Smc1 GSM766450 GSE30919 CapH2_Ab1_WT_mES_MM8 CAPH2 GSM766451 GSE30919 CapH2_Ab2_WT_mES_MM8 CAPH2 GSM766453 GSE30919 CapH2_Ab1_FLAVO_NOT_NORMALIZED_mES_MM8 CAPH2 GSM766455 GSE30919 Smc1_FLAVO_NOT_NORMALIZED_mES_MM8 Smc1 GSM824841 GSE33346 CapD3 Nocodazole mES MM8 CapD3 GSM824838 GSE33346 WCE shGFP mES MM8 input GSM824835 GSE33346 CapH2 Nocodazole mES MM8 CAPH2 GSM824836 GSE33346 CapH2 shGFP mES MM8 CAPH2 GSM824842 GSE33346 CapG WT mES MM8 CapG GSM824837 GSE33346 CapH2 shNipbl mES MM8 CAPH2 GSM824843 GSE33346 CapG Nocodazole mES MM8 CapG GSM824839 GSE33346 WCE shNipbl mES MM8 input GSM824840 GSE33346 CapD3 WT mES MM8 CapD3 GSM824845 GSE33346 Pol2 Asynchronous mES MM8 POL2 GSM824846 GSE33346 Pol2 Nocodazole mES MM8 POL2 GSM824844 GSE33346 WCE Nocodazole mES MM8 input GSM937543 GSE36561 RNA Pol2 (8WG16) ChIPseq in mES cells treated with retinoic acid for 8 hours POL2 mm8, GSM896915 GSE36561 11102009_42YJEAXX_B4 SA2 mm8, GSM937541 GSE36561 ChiP-Seq for SA1 in mES cells (rep 2) SA1 mm8, GSM896923 GSE36561 07212009_42F6FAAXX_B7 Brg1 mm8, GSM937538 GSE36561 PR1 - Pol2 in mES cells + DMSO 18 hr_ChipSeq POL2 mm8, GSM937539 GSE36561 PR2 - Pol2 in mES cells + JQ1 18 hr_ChipSeq POL2 mm8, GSM937540 GSE36561 Brd4 ChIP-seq in mES cells Brd4 mm8, GSM937542 GSE36561 ChIP-Seq for SA2 in mES cells (rep 2) SA2 mm8, GSM896916 GSE36561 11102009_42YJEAXX_B3 SA1 mm8, GSM928464 GSE37821,GSE37822 V65_Utx UTX , GSM928468 GSE37821,GSE37822 V65_KO_WCE input GSM928465 GSE37821,GSE37822 V65_WCE input GSM970527 GSE39513 Suz12_WT Suz12 GSM970535 GSE39513 H3_WT H3 GSM970530 GSE39513 Suz12_Utf1KO_Rep2 Suz12 GSM970536 GSE39513 H3_WT_Rep2 H3 GSM970525 GSE39513 BirA-Control Prop1 GSM970529 GSE39513 Suz12_Utf1KO Suz12 GSM970528 GSE39513 Suz12_WT_Rep2 Suz12 GSM970538 GSE39513 H3_Utf1KO_Rep2 H3 GSM970537 GSE39513 H3_Utf1KO H3 GSM970523 GSE39513 Input input GSM970524 GSE39513 Utf1 Prop1 GSM984544 GSE40063,GSE40065 H2AZ WT ChIP-Seq GFP mm9, GSM984545 GSE40063,GSE40065 H2AZ-AP3-modified ChIP-Seq GFP mm9, GSM1003593 GSE40860,GSE41267 WT-Kdm2a KDM2A mm9, GSM1003594 GSE40860,GSE41267 WT-Kdm2b KDM2B mm9, GSM1003595 GSE40860,GSE41267 WT-Input input mm9, GSM1065520 GSE43565,GSE43597 GSK_input input mm9, GSM1065519 GSE43565,GSE43597 bCatenin-BIOTINnoGSK Streptavidin mm9, GSM1065518 GSE43565,GSE43597 bCatenin-Biotin Streptavidin mm9, GSM1065521 GSE43565,GSE43597 noGSK_input input mm9, GSM1065517 GSE43565,GSE43597 bCatenin-FLAG FLAG mm9, GSM1082345 GSE44286,GSE44288 ChipSeq for Suz12 Suz12 mm9, GSM1082340 GSE44286,GSE44288 ChIP-Seq_Oct4_V65 42647 mm9, GSM1082341 GSE44286,GSE44288 ChIP-Seq_Sox2_V65 Sox2 mm9, GSM1082346 GSE44286,GSE44288 Cdk8_mES_r2_ChipSeq cdk8 mm9, GSM1082347 GSE44286,GSE44288 ChIP-Seq for Cdk9 in mES cells Cdk9 mm9, GSM1082343 GSE44286,GSE44288 ChIP-Seq_WCE input mm9, GSM1082342 GSE44286,GSE44288 ChIP-Seq_Nanog_V65 Nanog mm9, GSM1171633 GSE48172 shMLL3_input input UCSC mm9, GSM1192084 GSE48172 shMLL2_Input_rep2 input UCSC mm9, GSM1192079 GSE48172 shMLL2_H3K4me1 H3K4me1 UCSC mm9, GSM1192088 GSE48172 Input_V6.5 input UCSC mm9, GSM1171631 GSE48172 shMLL2_input input UCSC mm9, GSM1171627 GSE48172 shGFP_Input_rep2 input UCSC mm9, GSM1192078 GSE48172 shGFP_H3K4me1 H3K4me1 UCSC mm9, GSM1192086 GSE48172 shMLL3_Input_rep2 input UCSC mm9, GSM1171629 GSE48172 shGFP_Input input UCSC mm9, GSM1186441 GSE48895 V6.5_untreated_#2 GRO-seq mm9, GSM1186451 GSE48895 V6.5_50minFP_#2 GRO-seq mm9, GSM1186449 GSE48895 V6.5_25minFP_#2 GRO-seq mm9, GSM1186452 GSE48895 V6.5_50minDMSO_#1 GRO-seq mm9, GSM1186458 GSE48895 V6.5_50minTRP_#2 GRO-seq mm9, GSM1186454 GSE48895 V6.5_12.5minTRP_#1 GRO-seq mm9, GSM1186443 GSE48895 V6.5_2minFP_#2 GRO-seq mm9, GSM1186440 GSE48895 V6.5_untreated_#1 GRO-seq mm9, GSM1186456 GSE48895 V6.5_25minTRP_#2 GRO-seq mm9, GSM1186450 GSE48895 V6.5_50minFP_#1 GRO-seq mm9, GSM1186445 GSE48895 V6.5_5minFP_#2 GRO-seq mm9, GSM1186453 GSE48895 V6.5_50minDMSO_#2 GRO-seq mm9, GSM1186455 GSE48895 V6.5_12.5minTRP_#2 GRO-seq mm9, GSM1186457 GSE48895 V6.5_50minTRP_#1 GRO-seq mm9, GSM1186444 GSE48895 V6.5_5minFP_#1 GRO-seq mm9, GSM1186447 GSE48895 V6.5_12.5minFP_#2 GRO-seq mm9, GSM1186448 GSE48895 V6.5_25minFP_#1 GRO-seq mm9, GSM1186442 GSE48895 V6.5_2minFP_#1 GRO-seq mm9, GSM1186446 GSE48895 V6.5_12.5minFP_#1 GRO-seq mm9, GSM1246866 GSE51522 ChIP-Seq for CBP CBP hg19, mm9, GSM1246868 GSE51522 Ronin ChIP (R3)_ChipSeq Ronin hg19, mm9, GSM1246867 GSE51522 MBD3_ChipSeq MBD3 hg19, mm9, GSM1277676 GSE52899 ubH2A-ChIPSeq_KO_ES ubH2A mm9, GSM1277674 GSE52899 IgG-ChIPSeq_WT_ES input mm9, GSM1277678 GSE52899 H2A-ChIPSeq_KO_ES H2A mm9, GSM1277677 GSE52899 H2A-ChIPSeq_WT_ES H2A mm9, GSM1277675 GSE52899 ubH2A-ChIPSeq_WT_ES ubH2A mm9, GSM1277673 GSE52899 Usp16_ChIPSeq_KO_ES Usp16 mm9, GSM1277672 GSE52899 Usp16_ChIPSeq_WT_ES Usp16 mm9, GSM1287699 GSE53206,GSE53208 H2AZ_WT ChIP-Seq H2AZ mm9, GSM1287700 GSE53206,GSE53208 H2AZ_K3R3 ChIP-Seq H2AZ mm9, GSM1327153 GSE54745 Nanog-sg3-transient-Input input mm9, GSM1327152 GSE54745 Nanog-sg3-transient-IP HA mm9, GSM1397342 GSE57911,GSE57913 Smc1_ChIAPET_rep1 Smc1 mm9, GSM1439567 GSE59569 mESC_Med1_sc5334_ChipSeq Med1 mm9, GSM1439568 GSE59569 mESC_WCE input mm9, GSM1439566 GSE59569 mESC_Med1_Bethyl_ChipSeq Med1 mm9, GSM1463942 GSE60027 Cdk7_mES_r2_ChipSeq Cdk7 hg18 (human); mm8, GSM1463941 GSE60027 phPol2_Ser7_r2_ChipSeq POL2 hg18 (human); mm8, GSM1463943 GSE60027 Cdk8_mES_r1_ChipSeq cdk8 hg18 (human); mm8, GSM1487057 GSE60749 FBSLIF_H3K27ac H3K27ac mm9, GSM1487060 GSE60749 FBSLIF_whole cell extract input mm9, GSM1487064 GSE60749 2i_H3K27ac H3K27ac mm9, GSM1487067 GSE60749 2i_whole cell extract input mm9, GSM1487059 GSE60749 FBSLIF_RNAP2 POL2 mm9, GSM1487066 GSE60749 2i_RNAP2 POL2 mm9, GSM1499128 GSE61188 H3K27ac_shZic2_rep1 H3K27ac UCSC mm9, GSM1499117 GSE61188 Zic2_rep2 Zic2 UCSC mm9, GSM1499114 GSE61188 WCE_rep1 input UCSC mm9, GSM1499138 GSE61188 PolII_NonT_rep1 POL2 UCSC mm9, GSM1499142 GSE61188 Input_NonT_rep2 input UCSC mm9, GSM1499131 GSE61188 H3K4me1_NonT_rep2 H3K4me1 UCSC mm9, GSM1499126 GSE61188 H3K27ac_NonT_rep1 H3K27ac UCSC mm9, GSM1499143 GSE61188 Input_shZic2_rep2 input UCSC mm9, GSM1499118 GSE61188 Chd4 Chd4 UCSC mm9, GSM1499130 GSE61188 H3K4me1_NonT_rep1 H3K4me1 UCSC mm9, GSM1499140 GSE61188 PolII_shZic2_rep1 POL2 UCSC mm9, GSM1499116 GSE61188 Zic2_rep1 Zic2 UCSC mm9, GSM1499139 GSE61188 PolII_NonT_rep2 POL2 UCSC mm9, GSM1499141 GSE61188 PolII_shZic2_rep2 POL2 UCSC mm9, GSM1571962 GSE61188 Chd4_rep Chd4 UCSC mm9, GSM1499119 GSE61188 Mbd3 Mbd3 UCSC mm9, GSM1499135 GSE61188 Input_shZic2_rep3 input UCSC mm9, GSM1571963 GSE61188 Mbd3_rep Mbd3 UCSC mm9, GSM1499132 GSE61188 H3K4me1_shZic2_rep1 H3K4me1 UCSC mm9, GSM1571964 GSE61188 Zic3 Zic3 UCSC mm9, GSM1499125 GSE61188 Input_shZic2_rep1 input UCSC mm9, GSM1499120 GSE61188 WCE_rep2 input UCSC mm9, GSM1499115 GSE61188 Input_NonT_rep1 input UCSC mm9, GSM1499133 GSE61188 H3K4me1_shZic2_rep2 H3K4me1 UCSC mm9, GSM1499129 GSE61188 H3K27ac_shZic2_rep2 H3K27ac UCSC mm9, GSM1499134 GSE61188 Input_NonT_rep3 input UCSC mm9, GSM1499127 GSE61188 H3K27ac_NonT_rep2 H3K27ac UCSC mm9, GSM1526287 GSE62380 ChIP-seq-H3K27ac H3K27ac GSM1526286 GSE62380 ChIP-seq-IgG input GSM1526285 GSE62380 ChIP-seq-input input GSM1563569 GSE64058,GSE64059 mES ATAC-Seq DHS GRCm38, GSM1566091 GSE64188 v6.5 K27Ac_ChipSeq H3K27ac mm9, GSM1566104 GSE64188 v6.5-dC1 K27Ac_ChipSeq H3K27ac mm9, GSM1566092 GSE64188 v6.5-dC2 RNAPOLII_ChipSeq POL2 mm9, GSM1566090 GSE64188 v6.5-dC2 input_ChipSeq input mm9, GSM1566096 GSE64188 v6.5-dC1 input_ChipSeq input mm9, GSM1566102 GSE64188 v6.5 input_ChipSeq input mm9, GSM1566097 GSE64188 v6.5-dC1 PolII_ChipSeq POL2 mm9, GSM1566094 GSE64188 v6.5 PolII_ChipSeq POL2 mm9, GSM1566101 GSE64188 v6.5-dC2 K27Ac_ChipSeq H3K27ac mm9, GSM1566098 GSE64188 v6.5-dC5 input_ChipSeq input mm9, GSM1566100 GSE64188 v6.5-dC5 PolII_ChipSeq POL2 mm9, GSM1566103 GSE64188 v6.5-dC5 K27Ac_ChipSeq H3K27ac mm9, GSM1566095 GSE64188 v6.5-dC3 PolII_ChipSeq POL2 mm9, GSM1566093 GSE64188 v6.5-dC3 K27Ac_ChipSeq H3K27ac mm9, GSM1566099 GSE64188 v6.5-dC3 input_ChipSeq input mm9, GSM1572301 GSE64489 H3K27ac_in_v6.5_Aff3-shRNA-rep1 H3K27ac UCSC mm9, GSM1572281 GSE64489 Aff3_Ab1_in_v6.5-rep1 Aff3 UCSC mm9, GSM1572308 GSE64489 Pol_II_in_v6.5_Aff3-shRNA POL2 UCSC mm9, GSM1572309 GSE64489 v6.5-WCE-rep1 input UCSC mm9, GSM1572282 GSE64489 Aff3_Ab1_in_v6.5-rep2 Aff3 UCSC mm9, GSM1572310 GSE64489 v6.5-WCE-rep2 input UCSC mm9, GSM1572307 GSE64489 Pol_II_in_v6.5_NonT-shRNA POL2 UCSC mm9, GSM1572299 GSE64489 H3K27ac_in_v6.5_NonT-shRNA-rep1 H3K27ac UCSC mm9, GSM1572302 GSE64489 H3K27ac_in_v6.5_Aff3-shRNA-rep2 H3K27ac UCSC mm9, GSM1572300 GSE64489 H3K27ac_in_v6.5_NonT-shRNA-rep2 H3K27ac UCSC mm9, GSM1572283 GSE64489 Aff3_Ab2_in_v6.5 Aff3 UCSC mm9, GSM1644021 GSE67298,GSE67299 ATAC-Seq from v6.5 embryonic stem cells DHS mm10, GSM1659410 GSE67944 K3R3 Brd2 ChIP-seq Rep 1 Brd2 mm9, GSM1659405 GSE67944 Brd2 ChIP-seq Rep 2 Brd2 mm9, GSM1659412 GSE67944 K3R3 Brd4 ChIP-seq Rep 1 Brd4 mm9, GSM1659408 GSE67944 WT Brd4 ChIP-seq Rep 1 Brd4 mm9, GSM1659404 GSE67944 Brd2 ChIP-seq Rep 1 Brd2 mm9, GSM1659411 GSE67944 K3R3 Brd2 ChIP-seq Rep 2 Brd2 mm9, GSM1659406 GSE67944 WT Brd2 ChIP-seq Rep 1 Brd2 mm9, GSM1659407 GSE67944 WT Brd2 ChIP-seq Rep 2 Brd2 mm9, GSM1659409 GSE67944 WT Brd4 ChIP-seq Rep 2 Brd4 mm9, GSM1659413 GSE67944 K3R3 Brd4 ChIP-seq Rep 2 Brd4 mm9, GSM1693779 GSE69139,GSE69143 ATAC-seq - mES - 12hr KD, Control ASO rep2 DHS mm9, GSM1693777 GSE69139,GSE69143 ATAC-seq - mES - 12hr KD, 7SK ASO rep2 DHS mm9, GSM1693776 GSE69139,GSE69143 ATAC-seq - mES - 12hr KD, 7SK ASO rep1 DHS mm9, GSM1693778 GSE69139,GSE69143 ATAC-seq - mES - 12hr KD, Control ASO rep1 DHS mm9, GSM1865694 GSE69140,GSE69143 ChIP-seq - mES - Input2 - JQ1 1hr input mm9, GSM1693786 GSE69140,GSE69143 ChIP-seq - mES - Pou5f1 - 12hr KD, 7SK ASO rep1 Pou5f1 mm9, GSM1693790 GSE69140,GSE69143 ChIP-seq - mES - Baf155 - 12hr KD, 7SK ASO rep1 Baf155 mm9, GSM1693783 GSE69140,GSE69143 ChIP-seq - mES - Input - 12hr KD, 7SK ASO rep2 input mm9, GSM1693785 GSE69140,GSE69143 ChIP-seq - mES - Pou5f1 - 12hr KD, Control ASO rep2 Pou5f1 mm9, GSM1693780 GSE69140,GSE69143 ChIP-seq - mES - Input - 12hr KD, Control ASO rep1 input mm9, GSM1693788 GSE69140,GSE69143 ChIP-seq - mES - Baf155 - 12hr KD, Control ASO rep1 Baf155 mm9, GSM1865705 GSE69140,GSE69143 ChIP-seq - mES - ?-H2AX - 12hr KD, 7SK ASO rep1 H2AX mm9, GSM1865699 GSE69140,GSE69143 ChIP-seq - mES - Input2 - 12hr KD, Control ASO rep1 input mm9, GSM1865692 GSE69140,GSE69143 ChIP-seq - mES - WT - Brd4, rep2 Brd4 mm9, GSM1693791 GSE69140,GSE69143 ChIP-seq - mES - Baf155 - 12hr KD, 7SK ASO rep2 Baf155 mm9, GSM1865700 GSE69140,GSE69143 ChIP-seq - mES - Input2 - 12hr KD, Control ASO rep2 input mm9, GSM1865702 GSE69140,GSE69143 ChIP-seq - mES - Input2 - 12hr KD, 7SK ASO rep2 input mm9, GSM1693781 GSE69140,GSE69143 ChIP-seq - mES - Input - 12hr KD, Control ASO rep2 input mm9, GSM1693789 GSE69140,GSE69143 ChIP-seq - mES - Baf155 - 12hr KD, Control ASO rep2 Baf155 mm9, GSM1865704 GSE69140,GSE69143 ChIP-seq - mES - ?-H2AX - 12hr KD, Control ASO rep2 H2AX mm9, GSM1865698 GSE69140,GSE69143 ChIP-seq - mES - Pol II - JQ1 1hr, rep2 POL2 mm9, GSM1865697 GSE69140,GSE69143 ChIP-seq - mES - Pol II - JQ1 1hr, rep1 POL2 mm9, GSM1865701 GSE69140,GSE69143 ChIP-seq - mES - Input2 - 12hr KD, 7SK ASO rep1 input mm9, GSM1865696 GSE69140,GSE69143 ChIP-seq - mES - Pol II - DMSO 1hr, rep2 POL2 mm9, GSM1693794 GSE69140,GSE69143 ChIP-seq - mES - WT - Hexim1 Hexim1 mm9, GSM1693787 GSE69140,GSE69143 ChIP-seq - mES - Pou5f1 - 12hr KD, 7SK ASO rep2 Pou5f1 mm9, GSM1865691 GSE69140,GSE69143 ChIP-seq - mES - WT - Brd4, rep1 Brd4 mm9, GSM1693782 GSE69140,GSE69143 ChIP-seq - mES - Input - 12hr KD, 7SK ASO rep1 input mm9, GSM1865695 GSE69140,GSE69143 ChIP-seq - mES - Pol II - DMSO 1hr, rep1 POL2 mm9, GSM1865693 GSE69140,GSE69143 ChIP-seq - mES - Input2 - DMSO 1hr input mm9, GSM1865706 GSE69140,GSE69143 ChIP-seq - mES - ?-H2AX - 12hr KD, 7SK ASO rep2 H2AX mm9, GSM1693793 GSE69140,GSE69143 ChIP-seq - mES - WT - Ddx21 Ddx21 mm9, GSM1693792 GSE69140,GSE69143 ChIP-seq - mES - WT - Input input mm9, GSM1693784 GSE69140,GSE69143 ChIP-seq - mES - Pou5f1 - 12hr KD, Control ASO rep1 Pou5f1 mm9, GSM1865703 GSE69140,GSE69143 ChIP-seq - mES - ?-H2AX - 12hr KD, Control ASO rep1 H2AX mm9, GSM1693804 GSE69142,GSE69143 GRO-seq - mES - 12hr KD, 7SK ASO rep1 GRO-seq mm9, GSM1865826 GSE69142,GSE69143 GRO-seq - mES - 12hr KD, 7SK ASO rep3 GRO-seq mm9, GSM1693805 GSE69142,GSE69143 GRO-seq - mES - 12hr KD, 7SK ASO rep2 GRO-seq mm9, GSM1693806 GSE69142,GSE69143 GRO-seq - mES - 12hr KD, Control ASO rep1 GRO-seq mm9, GSM1865828 GSE69142,GSE69143 GRO-seq - mES - 12hr KD, Control ASO rep3 GRO-seq mm9, GSM1865829 GSE69142,GSE69143 GRO-seq - mES - 12hr KD, Control ASO rep4 GRO-seq mm9, GSM1693807 GSE69142,GSE69143 GRO-seq - mES - 12hr KD, Control ASO rep2 GRO-seq mm9, GSM1865827 GSE69142,GSE69143 GRO-seq - mES - 12hr KD, 7SK ASO rep4 GRO-seq mm9, GSM1861943 GSE72082 GABPA-FLAG ChIP-Seq in Modified mouse ES cells GABPA hg19, mm9, GSM2035849 GSE76692 Input.mESC+UTX+RA.2014_02_01 input MGSCv37, GSM2035846 GSE76692 Input.mESC-UTX-RA.2014_02_01 input MGSCv37, GSM2035857 GSE76692 Input.mESC+UTX+RA.2014_05_29 input MGSCv37, GSM2035851 GSE76692 Input.mESC-UTX+RA.2014_05_25 input MGSCv37, GSM2035852 GSE76692 Input.mESC+UTX-RA.2014_05_25 input MGSCv37, GSM2035856 GSE76692 Input.mESC+UTX-RA.2014_05_29 input MGSCv37, GSM2035850 GSE76692 Input.mESC-UTX-RA.2014_05_25 input MGSCv37, GSM2035853 GSE76692 Input.mESC+UTX+RA.2014_05_25 input MGSCv37, GSM2035855 GSE76692 Input.mESC-UTX+RA.2014_05_29 input MGSCv37, GSM2035848 GSE76692 Input.mESC+UTX-RA.2014_02_01 input MGSCv37, GSM2035854 GSE76692 Input.mESC-UTX-RA.2014_05_29 input MGSCv37, GSM2035847 GSE76692 Input.mESC-UTX+RA.2014_02_01 input MGSCv37, GSM2070528 GSE78258 MORC3_ChIPseq_input_replicate 2 input mm9, GSM2070529 GSE78258 MORC3_ChIPseq_input_replicate 3 input mm9, GSM2070525 GSE78258 MORC3_ChiPseq_replicate 2 MORC3 mm9, GSM2070527 GSE78258 MORC3_ChIPseq_input_replicate 1 input mm9, GSM2070524 GSE78258 MORC3_ChIPseq_replicate 1 MORC3 mm9, GSM2070526 GSE78258 MORC3_ChIPseq_replicate 3 MORC3 mm9,