GSM530315 GSE21207 Thymocytes_R2-/-beta_RAG2 RAG2 GSM530316 GSE21207 Thymocytes_D708A-R1-/-beta_RAG2 RAG2 GSM530318 GSE21207 Thymocytes_wt_RAG2 RAG2 GSM756892 GSE30518 E2A, Day 0 GSM756896 E2A GSM756895 GSE30518 H3K4me1, Day 2 GSM756896 H3K4me1 GSM756894 GSE30518 H3K4me1, Day 0 GSM756896 H3K4me1 GSM756893 GSE30518 E2A, Day 2 GSM756896 E2A GSM756896 GSE30518 Input input GSM832321 GSE33653,GSE33660 Runx1_thymocyte_control_ChIPseq Runx1 GSM832324 GSE33653,GSE33660 IgG_thymocyte_control_ChIPseq input GSM832328 GSE33653,GSE33660 IgG_thymocyte_Runx1KO_ChIPseq input GSM832327 GSE33653,GSE33660 Ring1b_thymocyte_Runx1KO_ChIPseq GSM832328 Ring1b GSM832325 GSE33653,GSE33660 Runx1_thymocyte_Runx1KO_ChIPseq GSM832328 Runx1 GSM832326 GSE33653,GSE33660 CBFb_thymocyte_Runx1KO_ChIPseq GSM832328 CBFb GSM832323 GSE33653,GSE33660 Ring1b_thymocyte_control_ChIPseq Ring1b GSM832322 GSE33653,GSE33660 CBFb_thymocyte_control_ChIPseq CBFb GSM845900 GSE34254 Anti-TCRb_inj EGR2 GSM1032656 GSE42110 Thymus_input input mm9, GSM1040434 GSE42451 thymocyte_53BP1ko_RPAip_a RPA GSM1040436 GSE42451 thymocyte_WT_RPAip_a RPA GSM1040437 GSE42451 thymocyte_WT_RPAip_b RPA GSM1040432 GSE42451 thymocyte_53BP1ko_ATMko_RPAip_a RPA GSM1040433 GSE42451 thymocyte_53BP1ko_ATMko_RPAip_b RPA GSM1040435 GSE42451 thymocyte_53BP1ko_RPAip_b RPA GSM1340645 GSE55635 MNase-H3K4me1 RagCD3 MNase Mouse samples : MM9, GSM1340643 GSE55635 MNase-H3K4me1 Rag MNase Mouse samples : MM9, GSM1340642 GSE55635 PolII N20 RagCD3 POL2 Mouse samples : MM9, GSM1340641 GSE55635 PolII N20 Rag POL2 Mouse samples : MM9, GSM1359851 GSE56360,GSE56395 Rag2 -/- Mnase-Seq MNase mm9, GSM1360735 GSE56393,GSE56395 Rag2 -/- Runx1 GSM1360736 Runx1 mm9, GSM1360723 GSE56393,GSE56395 Rag2 -/- H3K4me1 ChIP-Seq biorep 2 GSM1360736 H3K4me1 mm9, GSM1360719 GSE56393,GSE56395 Rag2 -/- Ets1 ChIP-Seq biorep 2 GSM1360736 Ets1 mm9, GSM1360720 GSE56393,GSE56395 Rag2 -/- RNA Pol II (N20) ChIP-Seq biorep 1 GSM1360736 POL2 mm9, GSM1360736 GSE56393,GSE56395 Rag2 -/- Input input mm9, GSM1360718 GSE56393,GSE56395 Rag2 -/- Ets1 ChIP-Seq biorep 1 GSM1360736 Ets1 mm9, GSM1360722 GSE56393,GSE56395 Rag2 -/- H3K4me1 ChIP-Seq biorep 1 GSM1360736 H3K4me1 mm9, GSM1360721 GSE56393,GSE56395 Rag2 -/- RNA Pol II (N20) ChIP-Seq biorep 2 GSM1360736 POL2 mm9, GSM1407360 GSE58293,GSE58333 ChIP-N_bloto Zfp335 MGSCv37, GSM1407361 GSE58293,GSE58333 ChIP-C_WT Zfp335 MGSCv37, GSM1407357 GSE58293,GSE58333 Input_WT input MGSCv37, GSM1407359 GSE58293,GSE58333 ChIP-N_WT Zfp335 MGSCv37, GSM1407358 GSE58293,GSE58333 Input_bloto input MGSCv37, GSM1407362 GSE58293,GSE58333 ChIP-C_bloto Zfp335 MGSCv37, GSM1577239 GSE64709 RAG2 RNA Pol II Ser5P ChIP-Seq POL2 mm9, GSM1617950 GSE66248 Thymus Satb1 ChIP-seq (TKS238B) Satb1 NCBI37/mm9, GSM1617949 GSE66248 Thymus input control ChIP-seq (TKS238A) input NCBI37/mm9, GSM1701774 GSE69474,GSE69478 RAG1ko_thy_mm_RAG1_D708ATg_TCRBetaTg_MNaseSeq B23 MNase GRCm37/mm9, GSM1701771 GSE69474,GSE69478 RAG1ko_thy_mm_RAG1_D708ATg_TCRBetaTg_MNaseSeq B17 MNase GRCm37/mm9, GSM1701772 GSE69474,GSE69478 RAG1ko_thy_mm_RAG1_D708ATg_TCRBetaTg_MNaseSeq B21 MNase GRCm37/mm9, GSM1701773 GSE69474,GSE69478 RAG1ko_thy_mm_RAG1_D708ATg_TCRBetaTg_MNaseSeq B22 MNase GRCm37/mm9, GSM1701783 GSE69475,GSE69478 RAG1_mm_cRAG1_ChIPseq E2 RAG1 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM1701793 GSE69475,GSE69478 RAG2_mm_RAG2dc_ChIPseq F3 RAG2 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM1701791 GSE69475,GSE69478 RAG2_mm_RAG1_ChIPseq A12 RAG2 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM1701795 GSE69475,GSE69478 RAG2_mm_RAG2ko_TCRBetaTg_ChIPseq C12 RAG2 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM1701789 GSE69475,GSE69478 RAG1_mm_RAG1_ChIPseq A9 RAG1 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM1701790 GSE69475,GSE69478 RAG2_mm_D708ATg_TCRBetaTg_ChIPseq B12 RAG2 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM1701794 GSE69475,GSE69478 RAG2_mm_RAG1ko_TCRBetaTg_ChIPseq D12 RAG2 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM1701788 GSE69475,GSE69478 RAG1_mm_RAG2ko_TCRBetaTg_ChIPseq C9 RAG1 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM1701785 GSE69475,GSE69478 RAG1_mm_RAG2dc_ChIPseq F2 RAG1 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM1701784 GSE69475,GSE69478 RAG1_mm_RAG2dc_ChIPseq F1 RAG1 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM1701792 GSE69475,GSE69478 RAG2_mm_cRAG1_ChIPseq E3 RAG2 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM1701786 GSE69475,GSE69478 RAG1_mm_D708ATg_TCRBetaTg_ChIPseq B9 RAG1 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM1701787 GSE69475,GSE69478 RAG1_mm_RAG1ko_TCRBetaTg_ChIPseq D9 RAG1 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM2113441 GSE80138 H3K27ac_ChIP-seq_rep2 H3K27ac mm9, GSM2113440 GSE80138 H3K27ac_ChIP-seq_rep1 H3K27ac mm9, GSM2175294 GSE81768,GSE81772 NKT Streptavidin ChIP-seq Streptavidin mm10, GSM2175293 GSE81768,GSE81772 Tg thy Streptavidin ChIP-seq Streptavidin mm10, GSM2300992 GSE83380 B6_thymocytes_IgG_ChIPseq input mm9, GSM2200440 GSE83380 Zfatf/f_thymocytes_ZFAT_ChIPseq ZFAT mm9, GSM2200445 GSE83380 Zfatf/f_thymocytes_H3K9ac/K27ac_ChIPseq H3K27ac mm9, GSM2300993 GSE83380 B6_thymocytes_ZFAT_ChIPseq ZFAT mm9, GSM2200447 GSE83380 Zfatf/f-LckCre_thymocytes_H3K9ac/K27ac_ChIPseq H3K27ac mm9, GSM2200442 GSE83380 Zfatf/f-LckCre_thymocytes_ZFAT_ChIPseq ZFAT mm9, GSM2226524 GSE84052 Thy_mm_RAG1_ChIPseq_rep1 RAG1 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM2226525 GSE84052 Thy_mm_RAG1_ChIPseq_rep2 RAG1 GRCm38p2/mm10 for mouse and GRCh37/hg19 for human, GSM2254870 GSE84974 E2A ChIP-Seq total thymocytes Streptavidin MM9,