GSM532739 GSE21314 Lefterova_mac_PPARg PPARg GSM532742 GSE21314 Lefterova_mac_CEBPb CEBPb GSM532741 GSE21314 Lefterova_mac_PU.1 PU1 GSM1131258 GSE46494 input DNA for ChIP-Seq C57BL6/J 100 ng/ml Kdo2-LipidA 1 hr formaldehyde input mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131253 GSE46494 H3K27Ac ChIP-Seq BALBc/J 100 ng/ml Kdo2-LipidA 1 hr GSM1131259 H3K27ac mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131257 GSE46494 p65 ChIP-Seq replicate 2 BALBc/J 100 ng/ml Kdo2-LipidA 1 hr GSM1131259 p65 mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131241 GSE46494 PU.1 ChIP-Seq BALBc/J 100 ng/ml Kdo2-LipidA 1 hr GSM1131259 PU1 mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131264 GSE46494 PU.1 ChIP-Seq CB6F1/J F1 Hybrids no treatment no PU1 mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131262 GSE46494 input DNA for MNase ChIP-Seq C57BL6/J no treatment input mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131242 GSE46494 C/EBPa ChIP-Seq C57BL6/J no treatment GSM1131262 CEBPa mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131244 GSE46494 C/EBPa ChIP-Seq BALBc/J no treatment GSM1131263 CEBPa mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131269 GSE46494 GRO-Seq BALBc/J no treatment no GRO-seq mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131252 GSE46494 H3K27Ac ChIP-Seq BALBc/J no treatment GSM1131263 H3K27ac mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131250 GSE46494 H3K27Ac ChIP-Seq C57BL6/J no treatment GSM1131262 H3K27ac mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131238 GSE46494 PU.1 ChIP-Seq C57BL6/J no treatment GSM1131262 PU1 mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131260 GSE46494 input DNA for ChIP-Seq C57BL6/J 100 ng/ml Kdo2-LipidA 1 hr DSG + formaldehyde input mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131277 GSE46494 PU.1 ChIP-Seq NOD/ShiLtJ no treatment no PU1 mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131270 GSE46494 GRO-Seq BALBc/J 100 ng/ml Kdo2-LipidA 1 hr no GRO-seq mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131239 GSE46494 PU.1 ChIP-Seq C57BL6/J 100 ng/ml Kdo2-LipidA 1 hr GSM1131258 PU1 mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131255 GSE46494 p65 ChIP-Seq replicate 1 BALBc/J 100 ng/ml Kdo2-LipidA 1 hr GSM1131259 p65 mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131261 GSE46494 input DNA for ChIP-Seq BALBc/J 100 ng/ml Kdo2-LipidA 1 hr DSG + formaldehyde input mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131268 GSE46494 GRO-Seq C57BL6/J 100 ng/ml Kdo2-LipidA 1 hr no GRO-seq mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131254 GSE46494 p65 ChIP-Seq replicate 1 C57BL6/J 100 ng/ml Kdo2-LipidA 1 hr GSM1131258 p65 mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131245 GSE46494 C/EBPa ChIP-Seq BALBc/J 100 ng/ml Kdo2-LipidA 1 hr GSM1131259 CEBPa mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131256 GSE46494 p65 ChIP-Seq replicate 2 C57BL6/J 100 ng/ml Kdo2-LipidA 1 hr GSM1131258 p65 mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131243 GSE46494 C/EBPa ChIP-Seq C57BL6/J 100 ng/ml Kdo2-LipidA 1 hr GSM1131258 CEBPa mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131265 GSE46494 C/EBPa ChIP-Seq CB6F1/J F1 Hybrids no treatment no CEBPa mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131266 GSE46494 H3K27Ac ChIP-Seq CB6F1/J F1 Hybrids no treatment no H3K27ac mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131259 GSE46494 input DNA for ChIP-Seq BALBc/J 100 ng/ml Kdo2-LipidA 1 hr formaldehyde input mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131240 GSE46494 PU.1 ChIP-Seq BALBc/J no treatment GSM1131263 PU1 mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131263 GSE46494 input DNA for MNase ChIP-Seq BALBc/J no treatment input mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131251 GSE46494 H3K27Ac ChIP-Seq C57BL6/J 100 ng/ml Kdo2-LipidA 1 hr GSM1131258 H3K27ac mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1131267 GSE46494 GRO-Seq C57BL6/J no treatment no GRO-seq mm9, BALB/cJ de novo assemblies (Keane, T. M. et al., Nature 477, 289-294 were downloaded from the Sanger Institute website: http://www.sanger.ac.uk/resources/mouse/genomes/, GSM1533908 GSE62826 TGEM H3K27Ac ChIP-Seq C57BL6/J no treatment GSM1533909 H3K27ac mm10, NOD/ShiLtJ and SPRET/EiJ from mm10 using published variants (Keane, T. M. et al., Nature 477, 289-294, GSM1533909 GSE62826 TGEM Input DNA for H3K27Ac ChIP-Seq C57BL6/J no treatment input mm10, NOD/ShiLtJ and SPRET/EiJ from mm10 using published variants (Keane, T. M. et al., Nature 477, 289-294, GSM1533912 GSE62826 TGEM PU.1 ChIP-Seq C57BL6/J no treatment PU1 mm10, NOD/ShiLtJ and SPRET/EiJ from mm10 using published variants (Keane, T. M. et al., Nature 477, 289-294, GSM1533913 GSE62826 TGEM Input DNA for PU.1 ChIP-Seq C57BL6/J no treatment input mm10, NOD/ShiLtJ and SPRET/EiJ from mm10 using published variants (Keane, T. M. et al., Nature 477, 289-294, GSM1545949 GSE63338,GSE63341 MA_g09_ATAC_Perit1 DHS mm9, GSM1545950 GSE63338,GSE63341 MA_g10_ATAC_Perit2 DHS mm9, GSM1562260 GSE63339 peritoneal_mac_Input DNA input mm9, GSM1545984 GSE63339,GSE63341 peritoneal mac_K4Me1_rep1 GSM1562260 H3K4me1 mm9, GSM1546007 GSE63339,GSE63341 MC_f01_Chimera_Perit1_K4Me1 H3K4me1 mm9, GSM1545987 GSE63339,GSE63341 peritoneal mac_K4Me1_rep2 GSM1562260 H3K4me1 mm9, GSM1545985 GSE63339,GSE63341 peritoneal mac_K27Ac_rep1 GSM1562260 H3K27ac mm9, GSM1546009 GSE63339,GSE63341 MC_f03_Chimera_Perit1_K27Ac GSM1546003 H3K27ac mm9, GSM1546022 GSE63339,GSE63341 MC_h1_Chimera_Perit2_K4Me1 GSM1546003 H3K4me1 mm9, GSM1546003 GSE63339,GSE63341 MC_f13_Chimera_Perit_WCE input mm9, GSM1545988 GSE63339,GSE63341 peritoneal mac_K27Ac_rep2 GSM1562260 H3K27ac mm9, GSM1546024 GSE63339,GSE63341 MC_h3_Chimera_Perit2_K27Ac GSM1546003 H3K27ac mm9, GSM1944623 GSE75175,GSE75177 AY_rep2_Input input mm9, GSM1944625 GSE75175,GSE75177 WT_rep1_Input input mm9, GSM1944622 GSE75175,GSE75177 AY_rep2_ChIP GSM1944623 Nrf2 mm9, GSM1944627 GSE75175,GSE75177 WT_rep2_Input input mm9, GSM1944626 GSE75175,GSE75177 WT_rep2_ChIP GSM1944627 Nrf2 mm9, GSM1944624 GSE75175,GSE75177 WT_rep1_ChIP GSM1944625 Nrf2 mm9, GSM1944631 GSE75175,GSE75177 AY_rep3_Input input mm9, GSM1944629 GSE75175,GSE75177 WT_rep3_Input input mm9, GSM1944621 GSE75175,GSE75177 AY_rep1_Input input mm9, GSM1944628 GSE75175,GSE75177 WT_rep3_ChIP GSM1944629 Nrf2 mm9, GSM1944620 GSE75175,GSE75177 AY_rep1_ChIP GSM1944621 Nrf2 mm9, GSM1944630 GSE75175,GSE75177 AY_rep3_ChIP GSM1944631 Nrf2 mm9,