GSM828132 GSE30267 Cdk9_0hr_ChIPSeq GSM749811 Cdk9 GSM749808 GSE30267,GSE30268 Pol_II_0hr_WCE_ChIPSeq GSM749811 POL2 GSM749816 GSE30267,GSE30268 input_6hr_WCE_ChIPSeq input GSM749810 GSE30267,GSE30268 AFF4_0hr_ChIPSeq ELL2 GSM749815 GSE30267,GSE30268 AFF4_6hr_ChIPSeq ELL2 GSM749812 GSE30267,GSE30268 Pol_II_6hr_ChIPSeq POL2 GSM749811 GSE30267,GSE30268 input_0hr_WCE_ChIPSeq input GSM749813 GSE30267,GSE30268 Pol_II_6hr_WCE_ChIPSeq POL2 GSM749809 GSE30267,GSE30268 ELL2_0hr_ChIPSeq GSM749811 ELL2 GSM749814 GSE30267,GSE30268 ELL2_6hr_ChIPSeq ELL2 GSM749807 GSE30267,GSE30268 Pol_II_0hr_ChIPSeq GSM749811 POL2 GSM851692 GSE32120 mES input ChIP-Seq input GSM851691 GSE32120 mES ELL ChIP-Seq GSM851692 ELL GSM1059864 GSE43275 Pou5f1/Oct4_ES_Sox17-V5 A Pou5f1 mm9, GSM1059858 GSE43275 Pou5f1/Oct4_ES_Sox2-V5 A Pou5f1 mm9, GSM1059853 GSE43275 Sox2KE_ES ChIP-seq B input mm9, GSM1059863 GSE43275 Pou5f1/Oct4_ES_Sox17EK-V5 B Pou5f1 mm9, GSM1059859 GSE43275 Pou5f1/Oct4_ES_Sox2-V5 B Pou5f1 mm9, GSM1059862 GSE43275 Pou5f1/Oct4_ES_Sox17EK-V5 A Pou5f1 mm9, GSM1059850 GSE43275 Sox2_ES ChIP-seq_A input mm9, GSM1059851 GSE43275 Sox2_ES ChIP-seq_B input mm9, GSM1059865 GSE43275 Mock ChIP 1 input mm9, GSM1059861 GSE43275 Pou5f1/Oct4_ES_Sox2KE-V5 B Pou5f1 mm9, GSM1059866 GSE43275 Mock ChIP 2 input mm9, GSM1059852 GSE43275 Sox2KE_ES ChIP-seq A input mm9, GSM1059857 GSE43275 Sox17_ES ChIP-seq B Sox17 mm9, GSM1059855 GSE43275 Sox17EK_ES ChIP-seq B input mm9, GSM1059860 GSE43275 Pou5f1/Oct4_ES_Sox2KE-V5 A Pou5f1 mm9, GSM1059856 GSE43275 Sox17_ES ChIP-seq A Sox17 mm9, GSM1059854 GSE43275 Sox17EK_ES ChIP-seq A input mm9, GSM1240119 GSE51176 MLL4_mES GSM1240120 MLL4 UCSC hg19 and UCSC mm9, GSM1240120 GSE51176 Input_mES input UCSC hg19 and UCSC mm9, GSM1300283 GSE53768 Utf1_KH2_mES_Biotin_ChIP Utf1 mm9, GSM1300285 GSE53768 KH2_mES_WCE input mm9, GSM1300284 GSE53768 Utf1_KH2_mES_endogenous_ChIP Utf1 mm9, GSM1842751 GSE56312 mES_Nanog_24h_2i_ab2 GSM1842747 Nanog mm9, GSM1842756 GSE56312 mES_Nanog_24h_2i_r2 GSM1842747 Nanog mm9, GSM1842743 GSE56312 mES_Pou5F1_2i GSM1842747 Pou5f1 mm9, GSM1842742 GSE56312 mES_Pou5F1_Serum GSM1842747 Pou5f1 mm9, GSM1842747 GSE56312 mES_WCE input mm9, GSM1842748 GSE56312 mES_Nanog_Serum_r1 GSM1842747 Nanog mm9, GSM1842749 GSE56312 mES_Nanog_Serum_GFPHigh GSM1842747 Nanog mm9, GSM1842754 GSE56312 mES_Nanog_3p_2i_r2 GSM1842747 Nanog mm9, GSM1842755 GSE56312 mES_Nanog_24h_2i_r1 GSM1842747 Nanog mm9, GSM1842753 GSE56312 mES_Nanog_Serum_r2 GSM1842747 Nanog mm9, GSM1842750 GSE56312 mES_Nanog_3p_2i_r1 GSM1842747 Nanog mm9, GSM1386358 GSE57665 H3.3 3 hrs no HA mm9, GSM1386360 GSE57665 Anti-Macro ES 2Reps no H2afy2 mm9, GSM1386359 GSE57665 H3.3 6 hrs no HA mm9, GSM1386363 GSE57665 ES HA 3 hrs no HA mm9, GSM1386362 GSE57665 ES HA No Dox no HA mm9, GSM1386364 GSE57665 ES HA 6 hrs no HA mm9, GSM1386365 GSE57665 ES HA 12 hrs no HA mm9, GSM1893946 GSE63974,GSE73441 GRO-Seq analysis in differentiated mouse ESCs replicate 2 no GRO-seq mm9, GSM1893943 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs replicate 2 no GRO-seq mm9, GSM1893951 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs under shControl knockdown treatment for 3 days replicate 1 no GRO-seq mm9, GSM1893949 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs under flavopiridol treatment replicate 2 no GRO-seq mm9, GSM1893954 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs under shPhf5a knockdown treatment for 3 days replicate 1 no GRO-seq mm9, GSM1893942 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs replicate 1 no GRO-seq mm9, GSM1893945 GSE63974,GSE73441 GRO-Seq analysis in differentiated mouse ESCs replicate 1 no GRO-seq mm9, GSM1893953 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs under shControl knockdown treatment for 3 days replicate 3 no GRO-seq mm9, GSM1893948 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs under flavopiridol treatment replicate 1 no GRO-seq mm9, GSM1893955 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs under shPhf5a knockdown treatment for 3 days replicate 2 no GRO-seq mm9, GSM1893959 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs under shPaf1 knockdown treatment for 3 days replicate 3 no GRO-seq mm9, GSM1893950 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs under flavopiridol treatment replicate 3 no GRO-seq mm9, GSM1893944 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs replicate 3 no GRO-seq mm9, GSM1893957 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs under shPaf1 knockdown treatment for 3 days replicate 1 no GRO-seq mm9, GSM1893958 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs under shPaf1 knockdown treatment for 3 days replicate 2 no GRO-seq mm9, GSM1893947 GSE63974,GSE73441 GRO-Seq analysis in differentiated mouse ESCs replicate 3 no GRO-seq mm9, GSM1893952 GSE63974,GSE73441 GRO-Seq analysis in mouse ESCs under shControl knockdown treatment for 3 days replicate 2 no GRO-seq mm9, GSM1893980 GSE63974,GSE73442 Sequencing analysis of input in mouse ESCs under shPhf5a knockdown treatment for replicate 2 and 3 input mm10, GSM1893978 GSE63974,GSE73442 Sequencing analysis of input in mouse ESCs under shControl knockdown treatment input mm10, GSM1893979 GSE63974,GSE73442 Sequencing analysis of input in mouse ESCs under shPhf5a knockdown treatment input mm10, GSM1893996 GSE63974,GSE73444 ChIP-Seq analysis of Ser5-Phosphorylated_PolII in mouse ESCs under shPhf5a knockdown treatment replicate 1 GSM1894006 POL2 mm10, GSM1894001 GSE63974,GSE73444 ChIP-Seq analysis of Ser2-Phosphorylated_PolII in mouse ESCs under shControl knockdown treatment replicate 3 GSM1894005 POL2 mm10, GSM1894000 GSE63974,GSE73444 ChIP-Seq analysis of Ser2-Phosphorylated_PolII in mouse ESCs under shControl knockdown treatment replicate 2 GSM1894005 POL2 mm10, GSM1894006 GSE63974,GSE73444 Sequencing analysis of input in mouse ESCs under shPhf5a knockdown treatment for PolII and Paf1 ChIP input mm10, GSM1894005 GSE63974,GSE73444 Sequencing analysis of input in mouse ESCs under shControl knockdown treatment for PolII and Paf1 ChIP input mm10, GSM1893995 GSE63974,GSE73444 ChIP-Seq analysis of Ser5-Phosphorylated_PolII in mouse ESCs under shControl knockdown treatment replicate 3 GSM1894005 POL2 mm10, GSM1893999 GSE63974,GSE73444 ChIP-Seq analysis of Ser2-Phosphorylated_PolII in mouse ESCs under shControl knockdown treatment replicate 1 GSM1894005 POL2 mm10, GSM1893993 GSE63974,GSE73444 ChIP-Seq analysis of Ser5-Phosphorylated_PolII in mouse ESCs under shControl knockdown treatment replicate 1 GSM1894005 POL2 mm10, GSM1893997 GSE63974,GSE73444 ChIP-Seq analysis of Ser5-Phosphorylated_PolII in mouse ESCs under shPhf5a knockdown treatment replicate 2 GSM1894006 POL2 mm10, GSM1893998 GSE63974,GSE73444 ChIP-Seq analysis of Ser5-Phosphorylated_PolII in mouse ESCs under shPhf5a knockdown treatment replicate 3 GSM1894006 POL2 mm10, GSM1893994 GSE63974,GSE73444 ChIP-Seq analysis of Ser5-Phosphorylated_PolII in mouse ESCs under shControl knockdown treatment replicate 2 GSM1894005 POL2 mm10, GSM1894010 GSE63974,GSE73445 ChIP-Seq analysis of Paf1 in mouse ESCs under shPhf5a knockdown treatment replicate 1 GSM1894006 Paf1 mm10, GSM1894012 GSE63974,GSE73445 ChIP-Seq analysis of Paf1 in mouse ESCs under shPhf5a knockdown treatment replicate 3 GSM1894006 Paf1 mm10, GSM1894008 GSE63974,GSE73445 ChIP-Seq analysis of Paf1 in mouse ESCs under shControl knockdown treatment replicate 2 GSM1894005 Paf1 mm10, GSM1894011 GSE63974,GSE73445 ChIP-Seq analysis of Paf1 in mouse ESCs under shPhf5a knockdown treatment replicate 2 GSM1894006 Paf1 mm10, GSM1894007 GSE63974,GSE73445 ChIP-Seq analysis of Paf1 in mouse ESCs under shControl knockdown treatment replicate 1 GSM1894005 Paf1 mm10, GSM1894009 GSE63974,GSE73445 ChIP-Seq analysis of Paf1 in mouse ESCs under shControl knockdown treatment replicate 3 GSM1894005 Paf1 mm10, GSM1572284 GSE64489 Aff3_Ab1_in_KH2 GSM1572311 Aff3 UCSC mm9, GSM1572311 GSE64489 KH2-WCE input UCSC mm9, GSM1842790 GSE71675,GSE71676 KH2.PRDM14 GSM1842788 PRDM14 mm9 and hg19, GSM1842789 GSE71675,GSE71676 KH2.POU5F1 GSM1842788 POU5F1 mm9 and hg19, GSM1842787 GSE71675,GSE71676 KH2.CBFA2T2 GSM1842788 CBFA2T2 mm9 and hg19, GSM1842788 GSE71675,GSE71676 KH2.input input mm9 and hg19,