GSM491759 GSE19708 MTF2_ChIPSeq MTF2 GSM491760 GSE19708 Jarid2_ChIPSeq Jarid2 GSM585233 GSE23716 Eed WT Input DNA replicate 1 input GSM585229 GSE23716 EedWT-Ring1B GSM585233 Ring1B GSM585235 GSE23716 Eed WT Input DNA replicate 3 input GSM585234 GSE23716 Eed WT Input DNA replicate 2 input GSM632038 GSE25532,GSE25533 ES_NFYA_biological_replicate_a [ChIP-Seq] GSM632041 NFYA GSM632039 GSE25532,GSE25533 ES_NFYA_biological_replicate_b [ChIP-Seq] GSM632041 NFYA GSM632036 GSE25532,GSE25533 ES_JNK13_biological_replicate_a [ChIP-Seq] GSM632041 JNK13 GSM632037 GSE25532,GSE25533 ES_JNK13_biological_replicate_b [ChIP-Seq] GSM632041 JNK13 GSM632041 GSE25532,GSE25533 Input [ChIP-Seq] input GSM632040 GSE25532,GSE25533,GSE33252 ES_PolII [ChIP-Seq] GSM632041 POL2 GSM706673 GSE28500,GSE28532 mES_Input_for_TET1 input GSM706672 GSE28500,GSE28532 mES_TET1 GSM706673 Tet1 GSM959054 GSE39263 ChIP-seq_ZFP143_mESC ZNF143 hg19 and mm9, GSM1041374 GSE42466 Suz12_ChIPSeq_2 Suz12 mm9, GSM1041376 GSE42466 IgG_old_ChIPSeq input mm9, GSM1041377 GSE42466 IgG_ChIPSeq_2 input mm9, GSM1041375 GSE42466 RYBP_ChIPSeq GSM1041376 RYBP mm9, GSM1041372 GSE42466 Ring1B_ChIPSeq GSM1041376 Ring1B mm9, GSM1041373 GSE42466 Cbx7_ChIPSeq GSM1041376 Cbx7 mm9, GSM1183119 GSE48666 control_BirA input mm9, NCBI Build 37, GSM1183117 GSE48666 bioDax1_R2 Dax1 mm9, NCBI Build 37, GSM1183114 GSE48666 bioTip60 Tip60 mm9, NCBI Build 37, GSM1183115 GSE48666 bioMax Max mm9, NCBI Build 37, GSM1183113 GSE48666 bioE2F4 E2F4 mm9, NCBI Build 37, GSM1183110 GSE48666 bioMyc_R1 Myc mm9, NCBI Build 37, GSM1183111 GSE48666 bioMyc_R2 Myc mm9, NCBI Build 37, GSM1183112 GSE48666 bioDmap1 Dmap1 mm9, NCBI Build 37, GSM1183118 GSE48666 bioNanog Nanog mm9, NCBI Build 37, GSM1183116 GSE48666 bioDax1_R1 Dax1 mm9, NCBI Build 37, GSM1194195 GSE49137,GSE49252 J1_Ino80_input input mm9, GSM1194194 GSE49137,GSE49252 J1_Ino80 GSM1194195 Ino80 mm9, GSM1252095 GSE51766 nucleosome J1 no MNase mm9, GSM1276719 GSE52071 E14_Mll2FL_C_GFP_FCS_LIF_2i_double_crosslink no GFP mm9, GSM1276720 GSE52071 E14_mock_GFP_FCS_LIF_2i_double_crosslink no GFP mm9, GSM1276718 GSE52071 E14_Mll2FL_N_GFP_FCS_LIF_2i no GFP mm9, GSM1276711 GSE52071 E14_PolII POL2 mm9, GSM1335484 GSE55404,GSE55437 Nanog_ChIPseq Nanog mm9, GSM1335485 GSE55404,GSE55437 BirA_control input mm9, GSM1606384 GSE55404,GSE55437 Tgif2_ChIPSeq Tgif2 mm9, GSM1335483 GSE55404,GSE55437 Smad3_ChIPseq Smad3 mm9, GSM1335481 GSE55404,GSE55437 Tgif1_ChIPSeq Tgif1 mm9, GSM1565738 GSE56821 Brain Tet3FL_ChIPSeq rep1 GSM1565736 mTet3FL mm9, GSM1565739 GSE56821 Brain Tet3FL_ChIPSeq rep2 GSM1565737 mTet3FL mm9, GSM1565736 GSE56821 Brain IgG_ChIPSeq rep1 input mm9, GSM1565737 GSE56821 Brain IgG_ChIPSeq rep2 input mm9, GSM1370511 GSE56876,GSE56877 BirA control input mm9, GSM1370515 GSE56876,GSE56877 HDAC1 in control ES cells_Mock input mm9, GSM1370513 GSE56876,GSE56877 HDAC1 in Arid3a OE cells_Mock input mm9, GSM1370510 GSE56876,GSE56877 Arid3a OE-Low Arid3a mm9, GSM1370509 GSE56876,GSE56877 Arid3a OE-High Arid3a mm9, GSM1385043 GSE57574,GSE57577 R_bulk_Dnmt3a2_ChIPSeq no FLAG mm9, GSM1385042 GSE57574,GSE57577 WWD_bulk_Dnmt3a2_ChIPSeq no FLAG mm9, GSM1385040 GSE57574,GSE57577 R_1_Dnmt3a2_ChIPSeq no FLAG mm9, GSM1385038 GSE57574,GSE57577 WT_1_Dnmt3a2_ChIPSeq no FLAG mm9, GSM1385041 GSE57574,GSE57577 WT_bulk_Dnmt3a2_ChIPSeq no FLAG mm9, GSM1385039 GSE57574,GSE57577 WWD_1_Dnmt3a2_ChIPSeq no FLAG mm9, GSM1385045 GSE57574,GSE57577 TKO_input_Dnmt3a2_ChIPSeq no FLAG mm9, GSM1406445 GSE58323 KAP1 ChIP-seq in WT mES cells KAP1 hg19, mm9, GSM1406446 GSE58323 Total input of mES KAP1 ChIP-seq input hg19, mm9, GSM1487549 GSE60763 ChIP-Seq H3K27ac J1 H3K27ac mm9, GSM1708668 GSE62666 input DNA_noTam_R2 input mm9, GSM1531189 GSE62666 input DNA_+Tam input mm9, GSM1708671 GSE62666 input DNA_+Tam_R2 input mm9, GSM1531186 GSE62666 input DNA_noTam input mm9, GSM1708669 GSE62666 input DNA_noTam_R3 input mm9, GSM1631193 GSE66735,GSE66736 mESC_ChIPseq_IgG input mm9, GSM1631192 GSE66735,GSE66736 mESC_ChIPseq_Flag(Tex10) no Flag mm9, GSM1631194 GSE66735,GSE66736 mESC_ChIPseq_Input input mm9, GSM1692826 GSE69098 Genomic DNA digested with MNase rep2 no MNase mm9, GSM1692831 GSE69098 MPE-ChIP-seq Input rep1 input mm9, GSM1692838 GSE69098 MNase Low-ChIP-seq Input rep2 input mm9, GSM1692829 GSE69098 MPE-ChIP-seq H3 rep1 no Histone H3 mm9, GSM1692830 GSE69098 MPE-ChIP-seq H3 rep2 no Histone H3 mm9, GSM1692828 GSE69098 MPE-ChIP-seq H2B rep2 no H2B mm9, GSM1692835 GSE69098 MNase Low-ChIP-seq H3 rep1 no Histone H3 mm9, GSM1692820 GSE69098 MNase-seq Standard MNase concentration rep2 no MNase mm9, GSM1692833 GSE69098 MNase Low-ChIP-seq H2B rep1 no H2B mm9, GSM1692836 GSE69098 MNase Low-ChIP-seq H3 rep2 no Histone H3 mm9, GSM1692837 GSE69098 MNase Low-ChIP-seq Input rep1 input mm9, GSM1692822 GSE69098 MNase-seq Low MNase concentration rep2 no MNase mm9, GSM1692832 GSE69098 MPE-ChIP-seq Input rep2 input mm9, GSM1692821 GSE69098 MNase-seq Low MNase concentration rep1 no MNase mm9, GSM1692819 GSE69098 MNase-seq Standard MNase concentration rep1 no MNase mm9, GSM1692834 GSE69098 MNase Low-ChIP-seq H2B rep2 no H2B mm9, GSM1692827 GSE69098 MPE-ChIP-seq H2B rep1 no H2B mm9, GSM1692825 GSE69098 Genomic DNA digested with MNase rep1 no MNase mm9, GSM1819860 GSE70811,GSE70850 J1_DAXX_CHIP DAXX mm9, GSM1819859 GSE70811,GSE70850 J1_ATRX_CHIP ATRX mm9, GSM1819861 GSE70811,GSE70850 J1_IgG_CHIP input mm9, GSM1971067 GSE71156 TXY WT mESCs -dox_ATAC-seq DHS mm9, GSM1971068 GSE71156 TXY deltaRepA mESCs -dox_ATAC-seq DHS mm9, GSM1971065 GSE71156 TXY WT mESCs +dox_ATAC-seq DHS mm9, GSM1971066 GSE71156 TXY deltaRepA mESCs +dox_ATAC-seq DHS mm9, GSM1841030 GSE71589,GSE71593 Input_J1_rep1 input mm10, GSM1841042 GSE71589,GSE71593 Input_J1_rep4 input mm10, GSM1841034 GSE71589,GSE71593 Input_J1_rep2 input mm10, GSM1841038 GSE71589,GSE71593 Input_J1_rep3 input mm10, GSM1948915 GSE75287 H1T_mESCs_ChIPseq no H1T hg19 or mm9, GSM1948916 GSE75287 Input_mESCs input hg19 or mm9, GSM2229351 GSE77002,GSE77004 Input input mm9, GSM2229385 GSE77002,GSE77004 H3K27ac_DKO3b1 GSM2229351 H3K27ac mm9, GSM2229384 GSE77002,GSE77004 H3K27ac_DKO3a2 GSM2229351 H3K27ac mm9, GSM2229374 GSE77002,GSE77004 H3K4me1_DKO3b1 GSM2229351 H3K4me1 mm9, GSM2229379 GSE77002,GSE77004 H3K27ac_J1 GSM2229351 H3K27ac mm9, GSM2229372 GSE77002,GSE77004 H3K4me1_DKO3a1 GSM2229351 H3K4me1 mm9, GSM2229373 GSE77002,GSE77004 H3K4me1_DKO3a2 GSM2229351 H3K4me1 mm9, GSM2229371 GSE77002,GSE77004 H3K4me1_DKO GSM2229351 H3K4me1 mm9, GSM2229381 GSE77002,GSE77004 H3K27ac_DKO GSM2229351 H3K27ac mm9, GSM2229383 GSE77002,GSE77004 H3K27ac_DKO3a1 GSM2229351 H3K27ac mm9, GSM2229382 GSE77002,GSE77004 H3K27ac_DKO-r2 GSM2229351 H3K27ac mm9, GSM2229369 GSE77002,GSE77004 H3K4me1_J1 GSM2229351 H3K4me1 mm9, GSM2080680 GSE78899,GSE78910 ES input Ring1b input GSM2080677 GSE78899,GSE78910 ES Cbx2 GSM2080674 Cbx2 GSM2080678 GSE78899,GSE78910 ES Ezh2 GSM2080674 Ezh2 GSM2080674 GSE78899,GSE78910 ES input input GSM2080682 GSE78899,GSE78910 ES Ring1b GSM2080680 RNF2 GSM2083108 GSE78984 ESC1 whole chromatin rep1 64U MNase no MNase dm3, mm9 and hg19, GSM2083112 GSE78984 ESC1 whole chromatin rep2 64U MNase no MNase dm3, mm9 and hg19, GSM2083107 GSE78984 ESC1 whole chromatin rep1 16U MNase no MNase dm3, mm9 and hg19, GSM2083110 GSE78984 ESC1 whole chromatin rep2 4U MNase no MNase dm3, mm9 and hg19, GSM2083105 GSE78984 ESC1 whole chromatin rep1 1U MNase MNase dm3, mm9 and hg19, GSM2083111 GSE78984 ESC1 whole chromatin rep2 16U MNase no MNase dm3, mm9 and hg19, GSM2083106 GSE78984 ESC1 whole chromatin rep1 4U MNase no MNase dm3, mm9 and hg19, GSM2083109 GSE78984 ESC1 whole chromatin rep2 1U MNase MNase dm3, mm9 and hg19,