GSM419049 GSE16723 macrophage_BCL6_ChIPSeq GSM419051 BCL6 GSM611113 GSE16723 macrophage_p65_ChIPSeq GSM419051 p65 GSM611117 GSE16723 macrophage_p65_LPS_ChIPSeq_2 GSM419051 p65 GSM611115 GSE16723 macrophage_BCL6_LPS_ChIPSeq_2 GSM419051 BCL6 GSM851557 GSE16723 macrophage_Bcl6_ChIPSeq replicate GSM419051 BCL6 GSM419051 GSE16723 macrophage_input_DNA input GSM611114 GSE16723 macrophage_BCL6_LPS_ChIPSeq_1 GSM419051 BCL6 GSM611116 GSE16723 macrophage_p65_LPS_ChIPSeq_1 GSM419051 p65 GSM419050 GSE16723 macrophage_IgG_ChIPSeq input GSM419052 GSE16723 macrophage_Pol_II_ChIPSeq POL2 GSM470557 GSE17631 jmjd3_2hr jmjd3 GSM470562 GSE17631 RNApolII_0hr POL2 GSM470563 GSE17631 RNApolII_2hr POL2 GSM470564 GSE17631 RNApolII_4hr POL2 GSM487452 GSE19553 H3K4me1.UT H3K4me1 GSM487451 GSE19553 PU.1.LPS_2h PU1 GSM487449 GSE19553 p300.LPS_2h EP300 GSM487450 GSE19553 PU.1.UT PU1 GSM487448 GSE19553 p300.UT EP300 GSM487453 GSE19553 Input_DNA input GSM499415 GSE19991 input_DNA input GSM499413 GSE19991 polII_ser5.UT POL2 GSM499414 GSE19991 polII_ser5.LPS_2h no POL2 GSM538020 GSE21512 BMDM.LXRDKO-H3K4me1-ChIP-Seq no H3K4me1 GSM538019 GSE21512 BMDM-H3K4me1-ChIP-Seq H3K4me1 GSM538018 GSE21512 BMDM.LXRDKO-PU.1-ChIP-Seq no PU1 GSM538017 GSE21512 BMDM-PU.1-ChIP-Seq PU1 GSM608240 GSE21910 Brd2_1H_minus Brd2 GSM545118 GSE21910 PolII_S2_1H_plus POL2 GSM608241 GSE21910 Brd2_1H_plus Brd2 GSM608247 GSE21910 new_H3Ac_0H_plus no H3Ac, Millipore, 06-599, DAM 1751896 GSM545122 GSE21910 PolII_total_0H_plus POL2 GSM545104 GSE21910 2_CDK_0H_plus CDK9 GSM545091 GSE21910 Brd4_1_1H_plus Brd4 GSM545115 GSE21910 PolII_S2_0H_minus POL2 GSM545124 GSE21910 PolII_total_1H_plus POL2 GSM608242 GSE21910 Brd3_0H_minus Brd3 GSM545116 GSE21910 PolII_S2_0H_plus POL2 GSM545123 GSE21910 PolII_total_1H_minus POL2 GSM545092 GSE21910 Brd4_2_1H_minus Brd4 GSM608238 GSE21910 Brd2_0H_minus Brd2 GSM608245 GSE21910 Brd3_1H_plus Brd3 GSM545121 GSE21910 PolII_total_0H_minus POL2 GSM545106 GSE21910 4_CDK_1H_plus CDK9 GSM545117 GSE21910 PolII_S2_1H_minus POL2 GSM608248 GSE21910 new_H3Ac_1H_minus no H3Ac, Millipore, 06-599, DAM 1751896 GSM608244 GSE21910 Brd3_1H_minus Brd3 GSM545095 GSE21910 Brd4_5_0H_plus Brd4 GSM608239 GSE21910 Brd2_0H_plus Brd2 GSM545103 GSE21910 1_CDK_0H_minus CDK9 GSM545096 GSE21910 Brd4_6_0H_minus Brd4 GSM608243 GSE21910 Brd3_0H_plus Brd3 GSM545105 GSE21910 3_CDK_1H_minus CDK9 GSM608246 GSE21910 new_H3Ac_0H_minus no H3Ac, Millipore, 06-599, DAM 1751896 GSM608249 GSE21910 new_H3Ac_1H_plus no H3Ac, Millipore, 06-599, DAM 1751896 GSM652857 GSE26550 BM_Mac_DNaselHS DHS GSM665927 GSE27033,GSE27060 Bcl6 KO macrophage_SMRT_ChIPSeq SMRT GSM665926 GSE27033,GSE27060 WT macrophage_NCoR_ChIPSeq NCoR GSM665928 GSE27033,GSE27060 Bcl6 KO macrophage_NCoR_ChIPSeq NCoR GSM665925 GSE27033,GSE27060 WT macrophage_SMRT_ChIPSeq SMRT GSM1000074 GSE31039,GSE49847 LICR_ChipSeq_BMDM_H3K27ac_adult-8wks GSM1000206 H3K27ac GSM1000066 GSE31039,GSE49847 LICR_ChipSeq_BMDM_H3K4me1_adult-8wks GSM1000206 H3K4me1 GSM1000206 GSE31039,GSE49847 LICR_ChipSeq_BMDM_Input_adult-8wks input GSM788652 GSE31796 NF-kB/p65-ChIP + 1uM Dex +LPS p65 GSM851495 GSE31796 GRIP1-ChIP + LPS GRIP1 GSM851496 GSE31796 GRIP1-ChIP + 1uM Dex + LPS replicate no GRIP1 GSM925280 GSE31796 IRF3-ChIP + 1uM Dex + LPS no IRF3 mm9, GSM788654 GSE31796 cJun-ChIP + 1uM Dex + LPS no cJun GSM788653 GSE31796 cJun-ChIP + LPS cJun GSM925279 GSE31796 IRF3-ChIP + LPS IRF3 mm9, GSM788651 GSE31796 GR-ChIP + 1uM Dex + LPS no GR GSM788650 GSE31796 GR-ChIP + 1uM Dex GR GSM830477 GSE33596,GSE33609 Input Macrophage Pool input GSM838687 GSE33913 ikk-/- Stat1 untreated BMM STAT1a GSM838692 GSE33913 ikk-/- Reverse crosslink 6hr IFNb BMM input GSM838684 GSE33913 WT Reverse crosslink 6hr IFNg BMM input GSM838681 GSE33913 WT Stat1 untreated BMM STAT1a GSM838683 GSE33913 WT Stat1 6hr IFNg BMM STAT1a GSM838689 GSE33913 ikk-/- Stat1 6hr IFNg BMM no STAT1a GSM838688 GSE33913 ikk-/- Reverse crosslink untreated BMM input GSM838682 GSE33913 WT Reverse crosslink untreated BMM input GSM838686 GSE33913 WT Reverse crosslink 6hr IFNb BMM input GSM838691 GSE33913 ikk-/- Stat1 6hr IFNb BMM no STAT1a GSM838685 GSE33913 WT Stat1 6hr IFNb BMM STAT1a GSM838690 GSE33913 ikk-/- Reverse crosslink 6hr IFNg BMM input GSM918737 GSE36027,GSE49847 LICR_ChipSeq_BMDM_Input_adult-8wks input GSM918720 GSE36027,GSE49847 LICR_ChipSeq_BMDM_Pol2_adult-8wks GSM918737 POL2 GSM884978 GSE36241,GSE37052 Unstimulated macrophages Foxo3a Wildtype ChIP-Seq Foxo3a , GSM940924 GSE38377,GSE38379 PU.1_UT PU1 mm9, GSM940934 GSE38377,GSE38379 PU.1_CpG PU1 mm9, GSM1022291 GSE38377,GSE38379 H3K4me1_tc_IL4_1h H3K4me1 mm9, GSM1022288 GSE38377,GSE38379 H3K4me1_tc_IL4_UT H3K4me1 mm9, GSM1022264 GSE38377,GSE38379 H3K27ac_stat6ko_ctrl_UT H3K27ac mm9, GSM940927 GSE38377,GSE38379 PU.1_LPS_24h PU1 mm9, GSM940931 GSE38377,GSE38379 PU.1_TGFb1_4h PU1 mm9, GSM1022280 GSE38377,GSE38379 PU.1_stat1ko_ctrl_UT PU1 mm9, GSM1022316 GSE38377,GSE38379 Stat1_tc_IFNg_1h Stat1 mm9, GSM940937 GSE38377,GSE38379 pol_II_LPS_24h POL2 mm9, GSM1022279 GSE38377,GSE38379 H3K4me1_stat1ko_IFNg_4h H3K4me1 mm9, GSM1022286 GSE38377,GSE38379 H3K27ac_stat1ko_UT H3K27ac mm9, GSM940903 GSE38377,GSE38379 H3K27ac_UT (2) H3K27ac mm9, GSM1022283 GSE38377,GSE38379 PU.1_stat1ko_IFNg_4h PU1 mm9, GSM1022268 GSE38377,GSE38379 H3K4me1_washout_IL4_UT H3K4me1 mm9, GSM1022263 GSE38377,GSE38379 PU.1_stat6ko_IL4_4h PU1 mm9, GSM1022292 GSE38377,GSE38379 H3K4me1_tc_IL4_2h H3K4me1 mm9, GSM940891 GSE38377,GSE38379 H3K4me1_UT (1) H3K4me1 mm9, GSM940897 GSE38377,GSE38379 H3K4me1_TNFa_4h H3K4me1 mm9, GSM1022317 GSE38377,GSE38379 Stat1_tc_IFNg_2h Stat1 mm9, GSM1022258 GSE38377,GSE38379 H3K4me1_stat6ko_UT H3K4me1 mm9, GSM940930 GSE38377,GSE38379 PU.1_TNFa_4h PU1 mm9, GSM940929 GSE38377,GSE38379 PU.1_IL4_4h PU1 mm9, GSM940895 GSE38377,GSE38379 H3K4me1_IFNg_4h H3K4me1 mm9, GSM940908 GSE38377,GSE38379 H3K27ac_TNFa_4h H3K27ac mm9, GSM940901 GSE38377,GSE38379 H3K4me1_CpG H3K4me1 mm9, GSM1022259 GSE38377,GSE38379 H3K4me1_stat6ko_IL4_4h H3K4me1 mm9, GSM940899 GSE38377,GSE38379 H3K4me1_IL1b_4h H3K4me1 mm9, GSM1022257 GSE38377,GSE38379 H3K4me1_stat6ko_ctrl_IL4_4h H3K4me1 mm9, GSM1022297 GSE38377,GSE38379 H3K27ac_tc_IL4_1h H3K27ac mm9, GSM940904 GSE38377,GSE38379 H3K27ac_LPS_4h H3K27ac mm9, GSM1022303 GSE38377,GSE38379 Stat6_tc_IL4_1h Stat6 mm9, GSM1022305 GSE38377,GSE38379 Stat6_tc_IL4_4h Stat6 mm9, GSM1022273 GSE38377,GSE38379 H3K4me1_washout_IFNg_24h H3K4me1 mm9, GSM940898 GSE38377,GSE38379 H3K4me1_TGFb1_4h H3K4me1 mm9, GSM940906 GSE38377,GSE38379 H3K27ac_IFNg_4h H3K27ac mm9, GSM1022314 GSE38377,GSE38379 Stat1_tc_IFNg_UT Stat1 mm9, GSM940902 GSE38377,GSE38379 H3K27ac_UT H3K27ac mm9, GSM1022270 GSE38377,GSE38379 H3K4me1_washout_IL4_72h H3K4me1 mm9, GSM1022256 GSE38377,GSE38379 H3K4me1_stat6ko_ctrl_UT H3K4me1 mm9, GSM1022313 GSE38377,GSE38379 PU.1_tc_IFNg_2h PU1 mm9, GSM940907 GSE38377,GSE38379 H3K27ac_IL4_4h H3K27ac mm9, GSM1022287 GSE38377,GSE38379 H3K27ac_stat1ko_IFNg_4h H3K27ac mm9, GSM1022293 GSE38377,GSE38379 H3K4me1_tc_IL4_4h H3K4me1 mm9, GSM1022289 GSE38377,GSE38379 H3K4me1_tc_IL4_15min H3K4me1 mm9, GSM1022265 GSE38377,GSE38379 H3K27ac_stat6ko_ctrl_IL4_4h H3K27ac mm9, GSM1022300 GSE38377,GSE38379 Stat6_tc_IL4_UT Stat6 mm9, GSM1022266 GSE38377,GSE38379 H3K27ac_stat6ko_UT H3K27ac mm9, GSM940935 GSE38377,GSE38379 pol_II_UT POL2 mm9, GSM940912 GSE38377,GSE38379 H3K27ac_CpG H3K27ac mm9, GSM940932 GSE38377,GSE38379 PU.1_IL1b_4h PU1 mm9, GSM1022311 GSE38377,GSE38379 PU.1_tc_IFNg_30min PU1 mm9, GSM1022262 GSE38377,GSE38379 PU.1_stat6ko_UT PU1 mm9, GSM1022278 GSE38377,GSE38379 H3K4me1_stat1ko_UT H3K4me1 mm9, GSM1022307 GSE38377,GSE38379 H3K4me1_tc_IFNg_30min H3K4me1 mm9, GSM940928 GSE38377,GSE38379 PU.1_IFNg_4h PU1 mm9, GSM1022282 GSE38377,GSE38379 PU.1_stat1ko_UT PU1 mm9, GSM940892 GSE38377,GSE38379 H3K4me1_UT (2) H3K4me1 mm9, GSM1022304 GSE38377,GSE38379 Stat6_tc_IL4_2h Stat6 mm9, GSM940910 GSE38377,GSE38379 H3K27ac_IL1b_4h H3K27ac mm9, GSM1022319 GSE38377,GSE38379 JunB_LPS_4h JunB mm9, GSM1022302 GSE38377,GSE38379 Stat6_tc_IL4_30min Stat6 mm9, GSM1022294 GSE38377,GSE38379 H3K27ac_tc_IL4_UT H3K27ac mm9, GSM940925 GSE38377,GSE38379 PU.1_UT (2) PU1 mm9, GSM1022321 GSE38377,GSE38379 Stat1_IFNg_4h Stat1 mm9, GSM1022277 GSE38377,GSE38379 H3K4me1_stat1ko_ctrl_IFNg_4h H3K4me1 mm9, GSM940936 GSE38377,GSE38379 pol_II_LPS_4h POL2 mm9, GSM940933 GSE38377,GSE38379 PU.1_MALP2 PU1 mm9, GSM940896 GSE38377,GSE38379 H3K4me1_IL4_4h H3K4me1 mm9, GSM1022312 GSE38377,GSE38379 PU.1_tc_IFNg_1h PU1 mm9, GSM1022308 GSE38377,GSE38379 H3K4me1_tc_IFNg_1h H3K4me1 mm9, GSM940926 GSE38377,GSE38379 PU.1_LPS_4h PU1 mm9, GSM1022299 GSE38377,GSE38379 H3K27ac_tc_IL4_4h H3K27ac mm9, GSM1022301 GSE38377,GSE38379 Stat6_tc_IL4_15min Stat6 mm9, GSM1022318 GSE38377,GSE38379 JunB_UT JunB mm9, GSM1022269 GSE38377,GSE38379 H3K4me1_washout_IL4_24h H3K4me1 mm9, GSM1022274 GSE38377,GSE38379 H3K4me1_washout_IFNg_72h H3K4me1 mm9, GSM1022271 GSE38377,GSE38379 H3K4me1_washout_IL4_24h+48h H3K4me1 mm9, GSM940893 GSE38377,GSE38379 H3K4me1_LPS_4h H3K4me1 mm9, GSM1022309 GSE38377,GSE38379 H3K4me1_tc_IFNg_2h H3K4me1 mm9, GSM1022323 GSE38377,GSE38379 H3K4me1_IL4_24h H3K4me1 mm9, GSM940905 GSE38377,GSE38379 H3K27ac_LPS_24h H3K27ac mm9, GSM1022284 GSE38377,GSE38379 H3K27ac_stat1ko_ctrl_UT H3K27ac mm9, GSM1022306 GSE38377,GSE38379 H3K4me1_tc_IFNg_UT H3K4me1 mm9, GSM1022281 GSE38377,GSE38379 PU.1_stat1ko_ctrl_IFNg_4h PU1 mm9, GSM940894 GSE38377,GSE38379 H3K4me1_LPS_24h H3K4me1 mm9, GSM940900 GSE38377,GSE38379 H3K4me1_MALP2 H3K4me1 mm9, GSM940911 GSE38377,GSE38379 H3K27ac_MALP2 H3K27ac mm9, GSM1022261 GSE38377,GSE38379 PU.1_stat6ko_ctrl_IL4_4h PU1 mm9, GSM1022272 GSE38377,GSE38379 H3K4me1_washout_IFNg_UT H3K4me1 mm9, GSM940909 GSE38377,GSE38379 H3K27ac_TGFb1_4h H3K27ac mm9, GSM1022276 GSE38377,GSE38379 H3K4me1_stat1ko_ctrl_UT H3K4me1 mm9, GSM1022315 GSE38377,GSE38379 Stat1_tc_IFNg_30min Stat1 mm9, GSM1022275 GSE38377,GSE38379 H3K4me1_washout_IFNg_24h+48h H3K4me1 mm9, GSM1022296 GSE38377,GSE38379 H3K27ac_tc_IL4_30min H3K27ac mm9, GSM1022322 GSE38377,GSE38379 H3K4me1_IFNg_24h H3K4me1 mm9, GSM1022290 GSE38377,GSE38379 H3K4me1_tc_IL4_30min H3K4me1 mm9, GSM1022295 GSE38377,GSE38379 H3K27ac_tc_IL4_15min H3K27ac mm9, GSM1022260 GSE38377,GSE38379 PU.1_stat6ko_ctrl_UT PU1 mm9, GSM1022310 GSE38377,GSE38379 PU.1_tc_IFNg_UT PU1 mm9, GSM1022320 GSE38377,GSE38379 Stat1_UT Stat1 mm9, GSM1022285 GSE38377,GSE38379 H3K27ac_stat1ko_ctrl_IFNg_4h H3K27ac mm9, GSM1022298 GSE38377,GSE38379 H3K27ac_tc_IL4_2h H3K27ac mm9, GSM1022267 GSE38377,GSE38379 H3K27ac_stat6ko_IL4_4h H3K27ac mm9, GSM1022324 GSE38379,GSE41677 FAIRE_UT FAIRE mm9, GSM999789 GSE40723 HCF1_CHIP-seq HCF1 mm9, GSM999791 GSE40723 Input_CHIP-seq input mm9, GSM999788 GSE40723 BAP1 flag_CHIP-seq FLAG mm9, GSM999790 GSE40723 OGT1_CHIP-seq OGT1 mm9, GSM1067656 GSE43654 TRIM33_macrophage_24h TRIM33 mm9, GSM1119598 GSE45914 RevErb DKO BMDM, GRO-seq GRO-seq mm9, GSM1119597 GSE45914 RevErb WT BMDM, GRO-seq GRO-seq mm9, GSM1223648 GSE50565 CEBPa_macrophages _ChIPSeq CEBPa mm9, GSM1228675 GSE50762 PU.1_shPU.1_rep1 PU1 mm9, GSM1228674 GSE50762 PU.1_empty_rep1 PU1 mm9, GSM1228685 GSE50762 BMDM_UT_shPu.1_rep1 MNase mm9, GSM1228680 GSE50762 BMDM_UT_rep1 MNase mm9, GSM1228681 GSE50762 BMDM_UT_rep2 MNase mm9, GSM1228686 GSE50762 BMDM_UT_empty_rep2 MNase mm9, GSM1228682 GSE50762 BMDM_UT_rep3 MNase mm9, GSM1228684 GSE50762 BMDM_UT_empty_rep1 MNase mm9, GSM1228676 GSE50762 PU.1_empty_rep2 PU1 mm9, GSM1228688 GSE50762 IV_MNase MNase mm9, GSM1228687 GSE50762 BMDM_UT_shPu.1_rep2 MNase mm9, GSM1228679 GSE50762 PU.1_IV_Pu.1_depleted PU1 mm9, GSM1228678 GSE50762 PU.1_IV_IgG_depleted PU1 mm9, GSM1228683 GSE50762 BMDM_UT_rep4 MNase mm9, GSM1228677 GSE50762 PU.1_shPU.1_rep2 PU1 mm9, GSM1314653 GSE54414 20080723_1440_C_BMM_LPS_0060_P50 p50 mm9, GSM1314665 GSE54414 20090529_1922_A_BMM_LPS_0240_PolII POL2 mm9, GSM1314650 GSE54414 20080723_1272_A_BMM_NoStim_0000_P50 p50 mm9, GSM1314656 GSE54414 20081022_1345_A_BMM_LPS_0240_ATF3 ATF3 mm9, GSM1314678 GSE54414 20090805_1960_B_BMM_LPS_0240_PolII POL2 mm9, GSM1314673 GSE54414 20090625_1920_A_BMM_LPS_0060_PolII POL2 mm9, GSM1314659 GSE54414 20081229_1349A_C_BMM_LPS_0120_P65 p65 mm9, GSM1314652 GSE54414 20080723_1438_C_BMM_NoStim_0000_P50 p50 mm9, GSM1314682 GSE54414 20091006_1881_X_BMM_LPS_0120_P65 p65 mm9, GSM1314672 GSE54414 20090611_1919_A_BMM_NoStim_0000_PolII POL2 mm9, GSM1314657 GSE54414 20081114_1352_B_BMM_LPS_0240_ATF3 ATF3 mm9, GSM1314651 GSE54414 20080723_1273_A_BMM_LPS_0060_P50 p50 mm9, GSM1314649 GSE54414 20080606_1348_B_BMM_LPS_0060_P50 p50 mm9, GSM1314658 GSE54414 20081114_1523_A_BMM_LPS_0060_P65 p65 mm9, GSM1314683 GSE54414 20091124_1879_X_BMM_NoStim_0000_P65 p65 mm9, GSM1314674 GSE54414 20090625_1921_A_BMM_LPS_0120_PolII POL2 mm9, GSM1314681 GSE54414 20090821_1880_X_BMM_LPS_0060_P65 p65 mm9, GSM1314675 GSE54414 20090625_1923_A_BMM_LPS_0360_PolII POL2 mm9, GSM1314655 GSE54414 20080731_1343_D_BMM_LPS_0060_P50 p50 mm9, GSM1314654 GSE54414 20080731_1342_D_BMM_NoStim_0000_P50 p50 mm9, GSM1314660 GSE54414 20090116_1420_C_BMM_LPS_0240_ATF3 ATF3 mm9, GSM1314677 GSE54414 20090805_1958_B_BMM_LPS_0060_PolII POL2 mm9, GSM1334039 GSE55317 ChIP-Seq of Atf3 HDL BMDM (Atf3 -/-) Atf3 mm9, GSM1334040 GSE55317 ChIP-Seq of Atf3 HDL+CpG BMDM (Atf3 +/+) Atf3 mm9, GSM1334041 GSE55317 ChIP-Seq of Atf3 HDL+CpG BMDM (Atf3 -/-) Atf3 mm9, GSM1334036 GSE55317 ChIP-Seq of Atf3 Unstim BMDM (Atf3 +/+) Atf3 mm9, GSM1334037 GSE55317 ChIP-Seq of Atf3 Unstim BMDM (Atf3 -/-) Atf3 mm9, GSM1334038 GSE55317 ChIP-Seq of Atf3 HDL BMDM (Atf3 +/+) Atf3 mm9, GSM1356201 GSE56121,GSE56123 PU1_BXH2_LPS_UT PU1 mm9, GSM1563701 GSE56121,GSE56123 STAT1_BXH2_IFNG_UT STAT1 mm9, GSM1356215 GSE56121,GSE56123 H3K27Ac_BXH2_LPS_4h H3K27ac mm9, GSM1563694 GSE56121,GSE56123 STAT1_BXH2_IFNB_1h STAT1 mm9, GSM1356197 GSE56121,GSE56123 IRF8_BXH2_LPS_4h IRF8 mm9, GSM1356209 GSE56121,GSE56123 STAT1_BXH2_IFN_60m STAT1 mm9, GSM1356196 GSE56121,GSE56123 IRF8_BXH2_LPS_2h IRF8 mm9, GSM1356194 GSE56121,GSE56123 IRF8_WT_LPS_4h IRF8 mm9, GSM1356204 GSE56121,GSE56123 STAT1_WT_IFN_UT STAT1 mm9, GSM1356222 GSE56121,GSE56123 STAT1_WT_LPS_2h STAT1 mm9, GSM1563689 GSE56121,GSE56123 STAT1_WT_IFNB_UT STAT1 mm9, GSM1356218 GSE56121,GSE56123 H3K27Ac_WT_IFN_60m H3K27ac mm9, GSM1356192 GSE56121,GSE56123 IRF8_WT_LPS_UT IRF8 mm9, GSM1356214 GSE56121,GSE56123 H3K27Ac_BXH2_LPS_2h H3K27ac mm9, GSM1563700 GSE56121,GSE56123 STAT1_WT_IFNG_4h STAT1 mm9, GSM1356219 GSE56121,GSE56123 H3K27Ac_BXH2_IFN_UT H3K27ac mm9, GSM1356200 GSE56121,GSE56123 PU1_WT_LPS_4h PU1 mm9, GSM1563687 GSE56121,GSE56123 IRF1_WT_LPS_2h IRF1 mm9, GSM1563686 GSE56121,GSE56123 IRF1_WT_LPS_UT IRF1 mm9, GSM1356213 GSE56121,GSE56123 H3K27Ac_BXH2_LPS_UT H3K27ac mm9, GSM1563685 GSE56121,GSE56123 STAT2_WT_LPS_4h STAT2 mm9, GSM1356202 GSE56121,GSE56123 PU1_BXH2_LPS_2h PU1 mm9, GSM1563702 GSE56121,GSE56123 STAT1_BXH2_IFNG_1h STAT1 mm9, GSM1563703 GSE56121,GSE56123 STAT1_BXH2_IFNG_2h STAT1 mm9, GSM1563704 GSE56121,GSE56123 STAT1_BXH2_IFNG_4h STAT1 mm9, GSM1356208 GSE56121,GSE56123 STAT1_BXH2_IFN_30m STAT1 mm9, GSM1356220 GSE56121,GSE56123 H3K27Ac_BXH2_IFN_30m H3K27ac mm9, GSM1356212 GSE56121,GSE56123 H3K27Ac_WT_LPS_4h H3K27ac mm9, GSM1563691 GSE56121,GSE56123 STAT1_WT_IFNB_2h STAT1 mm9, GSM1356203 GSE56121,GSE56123 PU1_BXH2_LPS_4h PU1 mm9, GSM1563684 GSE56121,GSE56123 STAT2_WT_LPS_2h STAT2 mm9, GSM1563693 GSE56121,GSE56123 STAT1_BXH2_IFNB_UT STAT1 mm9, GSM1563692 GSE56121,GSE56123 STAT1_WT_IFNB_4h STAT1 mm9, GSM1356216 GSE56121,GSE56123 H3K27Ac_WT_IFN_UT H3K27ac mm9, GSM1356207 GSE56121,GSE56123 STAT1_BXH2_IFN_UT STAT1 mm9, GSM1356199 GSE56121,GSE56123 PU1_WT_LPS_2h PU1 mm9, GSM1563697 GSE56121,GSE56123 STAT1_WT_IFNG_UT STAT1 mm9, GSM1356217 GSE56121,GSE56123 H3K27Ac_WT_IFN_30m H3K27ac mm9, GSM1356193 GSE56121,GSE56123 IRF8_WT_LPS_2h IRF8 mm9, GSM1356210 GSE56121,GSE56123 H3K27Ac_WT_LPS_UT H3K27ac mm9, GSM1563683 GSE56121,GSE56123 STAT2_WT_LPS_UT STAT2 mm9, GSM1356205 GSE56121,GSE56123 STAT1_WT_IFN_30m STAT1 mm9, GSM1563695 GSE56121,GSE56123 STAT1_BXH2_IFNB_2h STAT1 mm9, GSM1356206 GSE56121,GSE56123 STAT1_WT_IFN_60m STAT1 mm9, GSM1356195 GSE56121,GSE56123 IRF8_BXH2_LPS_UT IRF8 mm9, GSM1563690 GSE56121,GSE56123 STAT1_WT_IFNB_1h STAT1 mm9, GSM1356221 GSE56121,GSE56123 H3K27Ac_BXH2_IFN_60m H3K27ac mm9, GSM1563698 GSE56121,GSE56123 STAT1_WT_IFNG_1h STAT1 mm9, GSM1563696 GSE56121,GSE56123 STAT1_BXH2_IFNB_4h STAT1 mm9, GSM1356211 GSE56121,GSE56123 H3K27Ac_WT_LPS_2h H3K27ac mm9, GSM1356198 GSE56121,GSE56123 PU1_WT_LPS_UT PU1 mm9, GSM1563699 GSE56121,GSE56123 STAT1_WT_IFNG_2h STAT1 mm9, GSM1563688 GSE56121,GSE56123 IRF1_WT_LPS_4h IRF1 mm9, GSM1441279 GSE59636,GSE60103 H3K27Ac_MF.ucsc H3K27ac mm9, GSM1441295 GSE59636,GSE60103 H3K4me1_MF.ucsc H3K4me1 mm9, GSM1446194 GSE59764 ChIP-seq, Macrophage_Input GR mm9, GSM1446193 GSE59764 ChIP-seq, Macrophage_GR_GRdim GR mm9, GSM1446192 GSE59764 ChIP-seq, Macrophage_GR_WT GR mm9, GSM1516130 GSE61877,GSE61881 mm_rep2_dex_Input input mm9, GSM1516127 GSE61877,GSE61881 mm_rep1_cont_Input input mm9, GSM1516129 GSE61877,GSE61881 mm_rep2_cont_IP GSM1516131 BuGR2 mm9, GSM1516125 GSE61877,GSE61881 mm_rep1_cont_IP GSM1516127 BuGR2 mm9, GSM1516131 GSE61877,GSE61881 mm_rep2_cont_Input input mm9, GSM1516126 GSE61877,GSE61881 mm_rep1_dex_Input input mm9, GSM1516124 GSE61877,GSE61881 mm_rep1_dex_IP GSM1516126 BuGR2 mm9, GSM1516128 GSE61877,GSE61881 mm_rep2_dex_IP GSM1516130 BuGR2 mm9, GSM1520421 GSE62151 Adelman_Bl6_macrophage_RNAPolII_ChIP-seq_2hr_LPS_rep2 POL2 mm9, GSM1520416 GSE62151 Adelman_Bl6_macrophage_RNAPolII_ChIP-seq_untreated_rep1 POL2 mm9, GSM1520419 GSE62151 Adelman_Bl6_macrophage_RNAPolII_ChIP-seq_30min_LPS_rep2 POL2 mm9, GSM1520428 GSE62151 Adelman_Bl6_macrophage_MNase-seq_rep1 MNase mm9, GSM1520420 GSE62151 Adelman_Bl6_macrophage_RNAPolII_ChIP-seq_2hr_LPS_rep1 POL2 mm9, GSM1520417 GSE62151 Adelman_Bl6_macrophage_RNAPolII_ChIP-seq_untreated_rep2 POL2 mm9, GSM1520418 GSE62151 Adelman_Bl6_macrophage_RNAPolII_ChIP-seq_30min_LPS_rep1 POL2 mm9, GSM1520430 GSE62151 Adelman_Bl6_macrophage_MNase-seq_rep3 MNase mm9, GSM1520429 GSE62151 Adelman_Bl6_macrophage_MNase-seq_rep2 MNase mm9, GSM1533889 GSE62826 BMDM Input DNA for PU.1 ChIP-Seq C57BL6/J no treatment input mm10, NOD/ShiLtJ and SPRET/EiJ from mm10 using published variants (Keane, T. M. et al., Nature 477, 289-294, GSM1533885 GSE62826 BMDM H3K27Ac ChIP-Seq C57BL6/J no treatment GSM1533887 H3K27ac mm10, NOD/ShiLtJ and SPRET/EiJ from mm10 using published variants (Keane, T. M. et al., Nature 477, 289-294, GSM1533887 GSE62826 BMDM Input DNA for Mnase ChIP-Seq C57BL6/J no treatment input mm10, NOD/ShiLtJ and SPRET/EiJ from mm10 using published variants (Keane, T. M. et al., Nature 477, 289-294, GSM1581524 GSE64844 INPUT input mm10, GSM1581522 GSE64844 CREB GSM1581524 CREB mm10, GSM1581523 GSE64844 CREB 2 GSM1581525 CREB mm10, GSM1581525 GSE64844 INPUT 2 input mm10, GSM1624171 GSE66501,GSE66502 NCOR2_ChIPSeq NCOR2 NCBI37/mm9; July 2007, GSM1631863 GSE66774 H3K27ac_BMM_MKO_2_ChIPseq no H3K27ac mm9, GSM1631862 GSE66774 H3K27ac_BMM_WT_2_ChIPseq GSM1631868 H3K27ac mm9, GSM1631867 GSE66774 GPS2N_BMM_MKO_ChIPseq no GPS2 mm9, GSM1631858 GSE66774 H3K27ac_BMM_WT_1_ChIPseq GSM1631868 H3K27ac mm9, GSM1631859 GSE66774 H3K27ac_BMM_MKO_1_ChIPseq no H3K27ac mm9, GSM1631868 GSE66774 input_BMM_WT_ChIPseq input mm9, GSM1631866 GSE66774 GPS2N_BMM_WT_ChIPseq GSM1631868 GPS2 mm9, GSM1634798 GSE66951,GSE66955 wdr82sh_LMP_H3K27ac_LPS_4h H3K27ac mm9, GSM1634818 GSE66951,GSE66955 wdr82sh_sh1137_polII_ser2P_LPS_45min POL2 mm9, GSM1634820 GSE66951,GSE66955 wdr82sh_sh1137_polII_total_LPS_45min POL2 mm9, GSM1634809 GSE66951,GSE66955 wdr82sh_scrambled_polII_total_UT POL2 mm9, GSM1634808 GSE66951,GSE66955 wdr82sh_scrambled_polII_total_LPS_45min POL2 mm9, GSM1634807 GSE66951,GSE66955 wdr82sh_scrambled_polII_ser2P_UT POL2 mm9, GSM1634819 GSE66951,GSE66955 wdr82sh_sh1137_polII_ser2P_UT POL2 mm9, GSM1634810 GSE66951,GSE66955 wdr82sh_sh1137_H3K27ac_LPS_4h H3K27ac mm9, GSM1634804 GSE66951,GSE66955 wdr82sh_scrambled_H3K4me1_LPS_45min H3K4me1 mm9, GSM1634806 GSE66951,GSE66955 wdr82sh_scrambled_polII_ser2P_LPS_45min POL2 mm9, GSM1634815 GSE66951,GSE66955 wdr82sh_sh1137_H3K4me1_UT H3K4me1 mm9, GSM1634814 GSE66951,GSE66955 wdr82sh_sh1137_H3K4me1_LPS_45min H3K4me1 mm9, GSM1634805 GSE66951,GSE66955 wdr82sh_scrambled_H3K4me1_UT H3K4me1 mm9, GSM1634811 GSE66951,GSE66955 wdr82sh_sh1137_H3K27ac_UT H3K27ac mm9, GSM1634799 GSE66951,GSE66955 wdr82sh_LMP_H3K27ac_UT H3K27ac mm9, GSM1634821 GSE66951,GSE66955 wdr82sh_sh1137_polII_total_UT POL2 mm9, GSM1645126 GSE67343,GSE67357 SRF-30 GSM1645129 SRF mm9, GSM1645117 GSE67343,GSE67357 RELA-30-Rep2 GSM1645123 RelA mm9, GSM1645128 GSE67343,GSE67357 SRF-120 GSM1645129 SRF mm9, GSM1645127 GSE67343,GSE67357 SRF-60 GSM1645129 SRF mm9, GSM1645129 GSE67343,GSE67357 SRF-INPUT input mm9, GSM1645123 GSE67343,GSE67357 RelA-INPUT-Rep2 input mm9, GSM1645114 GSE67343,GSE67357 RELA-15 GSM1645122 RelA mm9, GSM1645113 GSE67343,GSE67357 RELA-0-Rep2 GSM1645123 RelA mm9, GSM1645121 GSE67343,GSE67357 RELA-120-Rep2 GSM1645123 RelA mm9, GSM1645122 GSE67343,GSE67357 RelA-INPUT input mm9, GSM1645112 GSE67343,GSE67357 RELA-0 GSM1645122 RelA mm9, GSM1645119 GSE67343,GSE67357 RELA-60-Rep2 GSM1645123 RelA mm9, GSM1645115 GSE67343,GSE67357 RELA-15-Rep2 GSM1645123 RelA mm9, GSM1645120 GSE67343,GSE67357 RELA-120 GSM1645122 RelA mm9, GSM1645124 GSE67343,GSE67357 SRF-0 GSM1645129 SRF mm9, GSM1645125 GSE67343,GSE67357 SRF-15 GSM1645129 SRF mm9, GSM1645118 GSE67343,GSE67357 RELA-60 GSM1645122 RelA mm9, GSM1645116 GSE67343,GSE67357 RELA-30 GSM1645122 RelA mm9, GSM1913599 GSE67357,GSE74191 0m_rep1 DHS mm9, GSM1913604 GSE67357,GSE74191 120m_rep2 no DHS mm9, GSM1913605 GSE67357,GSE74191 120m_rep3 no DHS mm9, GSM1913600 GSE67357,GSE74191 0m_rep2 DHS mm9, GSM1913602 GSE67357,GSE74191 0m_rep4 DHS mm9, GSM1913606 GSE67357,GSE74191 120m_rep4 no DHS mm9, GSM1913601 GSE67357,GSE74191 0m_rep3 DHS mm9, GSM1913603 GSE67357,GSE74191 120m_rep1 no DHS mm9, GSM1808288 GSE70517 IL10KO_BMM_Unstimulated_FAIRE_Rep2 FAIRE mm9, GSM1808284 GSE70517 WT_BMM_Unstimulated_FAIRE_Rep2 FAIRE mm9, GSM1808286 GSE70517 WT_BMM_LPS_FAIRE_Rep2 FAIRE mm9, GSM1808303 GSE70517 IL10KO_BMM_Unstimulated_plusIL10_FAIRE_Rep1 FAIRE mm9, GSM1808285 GSE70517 WT_BMM_LPS_FAIRE_Rep1 FAIRE mm9, GSM1808289 GSE70517 IL10KO_BMM_LPS_FAIRE_Rep1 FAIRE mm9, GSM1808283 GSE70517 WT_BMM_Unstimulated_FAIRE_Rep1 FAIRE mm9, GSM1808290 GSE70517 IL10KO_BMM_LPS_FAIRE_Rep2 FAIRE mm9, GSM1808304 GSE70517 IL10KO_BMM_Unstimulated_plusIL10_FAIRE_Rep2 FAIRE mm9, GSM1808306 GSE70517 IL10KO_BMM_LPS_plusIL10_FAIRE_Rep2 FAIRE mm9, GSM1808305 GSE70517 IL10KO_BMM_LPS_plusIL10_FAIRE_Rep1 FAIRE mm9, GSM1808287 GSE70517 IL10KO_BMM_Unstimulated_FAIRE_Rep1 FAIRE mm9, GSM1875494 GSE72964 Sample19.Fos ChIP-Seq KLA 6h cFos mm9, GSM1875487 GSE72964 Sample12.Input for PU.1 ChIP-Seq tissue homogenate 6h input mm9, GSM1875499 GSE72964 Sample24.Input for p65, Smad3, and Fos ChIP-Seq tissue homogenate 6h input mm9, GSM1875501 GSE72964 Sample26.Smad3 ChIP-Seq tissue homogenate 6h Smad3 mm9, GSM1875483 GSE72964 Sample8.Input for H3K27Ac ChIP-Seq tissue homogenate 3h input mm9, GSM1875509 GSE72964 Sample34.Input for Smad3 ChIP-Seq no treatment input mm9, GSM1875506 GSE72964 Sample31.p65 ChIP-Seq no treatment p65 mm9, GSM1875482 GSE72964 Sample7.H3K27Ac ChIP-Seq wouldhomogenate 3h H3K27ac mm9, GSM1875478 GSE72964 Sample3.H3K27Ac ChIP-Seq tissue homogenate 6h H3K27ac mm9, GSM1875508 GSE72964 Sample33.Smad3 ChIP-Seq no treatment Smad3 mm9, GSM1875503 GSE72964 Sample28.Input for p65 ChIP-Seq KLA 6h input mm9, GSM1875479 GSE72964 Sample4.Input for H3K27Ac ChIP-Seq tissue homogenate 6h input mm9, GSM1875490 GSE72964 Sample15.Fos ChIP-Seq tissue homogenate 6h cFos mm9, GSM2212313 GSE72964 Sample113.WT.BMDM.chip.nrf2.tissuehomogenate.6h Nrf2 mm9, GSM1875495 GSE72964 Sample20.Input for Fos ChIP-Seq KLA 6h input mm9, GSM1875486 GSE72964 Sample11.PU.1 ChIP-Seq tissue homogenate 6h PU1 mm9, GSM2212314 GSE72964 Sample114.WT.BMDM.input.nrf2.tissuehomogenate.6h input mm9, GSM1875493 GSE72964 Sample18.Input for Fos ChIP-Seq no treatment input mm9, GSM1875492 GSE72964 Sample17.Fos ChIP-Seq no treatment cFos mm9, GSM1875511 GSE72964 Sample36.Input for Smad3 ChIP-Seq TGFb 4h input mm9, GSM1875498 GSE72964 Sample23.p65 ChIP-Seq tissue homogenate 6h p65 mm9, GSM1875505 GSE72964 Sample30.Input for p65 ChIP-Seq TGFb 6h input mm9, GSM1875502 GSE72964 Sample27.p65 ChIP-Seq KLA 6h p65 mm9, GSM1875507 GSE72964 Sample32.Input for p65 ChIP-Seq no treatment input mm9, GSM1875510 GSE72964 Sample35.Smad3 ChIP-Seq TGFb 4h Smad3 mm9, GSM1875491 GSE72964 Sample16.Input for Fos ChIP-Seq tissue homogenate 6h input mm9, GSM1875504 GSE72964 Sample29.p65 ChIP-Seq TGFb 6h p65 mm9, GSM1898047 GSE73568 Hes1_KO_LPS_rep2 no POL2 mm10, GSM1898046 GSE73568 Hes1_KO_UT_rep2 no POL2 mm10, GSM1898045 GSE73568 WT_LPS_rep2 POL2 mm10, GSM1898042 GSE73568 Hes1_KO_UT_rep1 no POL2 mm10, GSM1898044 GSE73568 WT_UT_rep2 POL2 mm10, GSM1898043 GSE73568 Hes1_KO_LPS_rep1 no POL2 mm10, GSM1898041 GSE73568 WT_LPS_rep1 POL2 mm10, GSM1898040 GSE73568 WT_UT_rep1 POL2 mm10, GSM1964739 GSE75722 WT BMM MafB_ChIPSeq MafB mm9, GSM1964725 GSE75722 WT BMM H3K4me1_ChIPSeq H3K4me1 mm9, GSM1964736 GSE75722 WT BMM PU.1_ChIPSeq PU1 mm9, GSM1964729 GSE75722 WT BMM H3K27ac_ChIPSeq H3K27ac mm9, GSM1964732 GSE75722 WT BMM P300_ChIPSeq EP300 mm9, GSM2049390 GSE77334 CDK9_WT_LPS1h CDK9 X mm10, GSM2049388 GSE77334 Hes1_OE_LPS1h HES1 mm10, GSM2049387 GSE77334 Hes1_OE_UT HES1 mm10, GSM2049389 GSE77334 CDK9_WT_UT CDK9 X mm10, GSM2060967 GSE77884,GSE77886 IRF1-/-_BMDM_H3K27Ac_UT GSM2060961 H3K27ac mm9, GSM2060955 GSE77884,GSE77886 B6_BMDM_IRF1_UT IRF1 mm9, GSM2060959 GSE77884,GSE77886 B6_BMDM_PU1_IFNg_0.5h PU1 mm9, GSM2060965 GSE77884,GSE77886 IRF8m/m_BMDM_H3K27Ac_UT GSM2060961 H3K27ac mm9, GSM2060963 GSE77884,GSE77886 B6_BMDM_H3K27Ac_UT GSM2060961 H3K27ac mm9, GSM2060968 GSE77884,GSE77886 IRF1-/-_BMDM_H3K27Ac_IFNg_3h GSM2060961 H3K27ac mm9, GSM2060954 GSE77884,GSE77886 B6_BMDM_IRF8_IFNg_3h IRF8 mm9, GSM2060953 GSE77884,GSE77886 B6_BMDM_IRF8_IFNg_0.5h IRF8 mm9, GSM2060958 GSE77884,GSE77886 B6_BMDM_PU1_UT PU1 mm9, GSM2060960 GSE77884,GSE77886 B6_BMDM_PU1_IFNg_3h PU1 mm9, GSM2060962 GSE77884,GSE77886 B6_BMDM_H3K4me1_UT GSM2060961 H3K4me1 mm9, GSM2060966 GSE77884,GSE77886 IRF8m/m_BMDM_H3K27Ac_IFNg_3h GSM2060961 H3K27ac mm9, GSM2060952 GSE77884,GSE77886 B6_BMDM_IRF8_UT IRF8 mm9, GSM2060957 GSE77884,GSE77886 B6_BMDM_IRF1_IFNg_3h IRF1 mm9, GSM2060961 GSE77884,GSE77886 B6_BMDM_IgG_control input mm9, GSM2060956 GSE77884,GSE77886 B6_BMDM_IRF1_IFNg_0.5h IRF1 mm9, GSM2060964 GSE77884,GSE77886 B6_BMDM_H3K27Ac_IFNg_3h GSM2060961 H3K27ac mm9, FANTOM5 CAGE mm9