GSM297892 GSE10042 HeLa expression profile no MNase GSM320736 GSE12782,GSE12783 IFN_gamma_STAT1_ChIP-Seq in HeLa S3 GSM320737 STAT1 GSM320737 GSE12782,GSE12783 IFN_gamma_Input_DNA in HeLa S3 input GSM352184 GSE14022 MNase-digested DNA from HeLa S3 cells MNase GSM385510 GSE15353 HeLa S3 STAT1 ChIP unstimulated_2 STAT1 GSM385506 GSE15353 HeLa S3 STAT1 ChIP IFNgamma_4 STAT1 GSM385514 GSE15353 HeLa S3 STAT1 ChIP unstimulated_6 STAT1 GSM385512 GSE15353 HeLa S3 STAT1 ChIP unstimulated_4 STAT1 GSM385505 GSE15353 HeLa S3 STAT1 ChIP IFNgamma_3 STAT1 GSM385509 GSE15353 HeLa S3 STAT1 ChIP unstimulated_1 STAT1 GSM385504 GSE15353 HeLa S3 STAT1 ChIP IFNgamma_2 STAT1 GSM385511 GSE15353 HeLa S3 STAT1 ChIP unstimulated_3 STAT1 GSM385503 GSE15353 HeLa S3 STAT1 ChIP IFNgamma_1 STAT1 GSM385508 GSE15353 HeLa S3 STAT1 ChIP IFNgamma_6 STAT1 GSM385515 GSE15353 HeLa S3 STAT1 ChIP unstimulated_7 STAT1 GSM385513 GSE15353 HeLa S3 STAT1 ChIP unstimulated_5 STAT1 GSM385507 GSE15353 HeLa S3 STAT1 ChIP IFNgamma_5 STAT1 GSM509052 GSE20309 HeLa_Pol3ChIPseq_Rep1 GSM509051 Pol3 GSM509050 GSE20309 HeLa_Brf2ChIPseq_Rep1 GSM509051 Brf2 GSM509056 GSE20309 HeLa_TFIIICChIPseq_Rep1 GSM509051 A301-242A GSM509053 GSE20309 HeLa_Pol3ChIPseq_Rep2 no Pol3 GSM509051 GSE20309 HeLa_InputChIPseq_Rep1 input GSM509049 GSE20309 HeLa_Brf1ChIPseq_Rep1 GSM509051 RPB90 GSM520387 GSE20725,GSE20753 Normal IgG ChIP-seq HeLa input GSM520381 GSE20725,GSE20753 PHF8 ChIP-seq HeLa GSM520387 PHF8 GSM593999 GSE24126 p68_genomic_rep1 GSM594000 p68 GSM594000 GSE24126 input_genomic_rep1 input GSM601399 GSE24397,GSE24398 Brg1_ChIPSeq BRG1 GSM601400 GSE24397,GSE24398 BAF155_ChIPSeq BAF155 GSM601401 GSE24397,GSE24398 BAF170_ChIPSeq BAF170 GSM601398 GSE24397,GSE24398 Ini1_ChIPSeq Ini1 GSM607486 GSE24632 ZNF274_HelaS3_ChIP-seq_rep2 ZNF274 GSM607485 GSE24632 ZNF274_HelaS3_ChIP-seq_rep1 ZNF274 GSM608163 GSE24685 ELK1_HeLa_ChIP-seq_rep1 ELK1 GSM608161 GSE24685 ELK4_HeLa_ChIP-seq_rep1 ELK4 GSM608162 GSE24685 ELK4_HeLa_ChIP-seq_rep2 ELK4 GSM608159 GSE24685 TR4_HeLa_ChIP-seq_rep1 TR4 GSM608160 GSE24685 TR4_HeLa_ChIP-seq_rep2 TR4 GSM623514 GSE25344,GSE25442,GSE30227 HelaS3_DNASE DHS GSM733759 GSE29611 Bernstein_HeLa-S3_Pol2(b) GSM733659 POL2 GSM733659 GSE29611 Bernstein_HeLa-S3_Control input GSM733684 GSE29611,GSE51334 Bernstein_HeLa-S3_H3K27ac H3K27ac GSM1003520 GSE29611,GSE51334 Broad_ChipSeq_HeLa-S3_EZH2_(39875) EZH2 GSM1003483 GSE29611,GSE51334 Broad_ChipSeq_HeLa-S3_H2A.Z H2A.Z GSM798322 GSE29611,GSE51334 Broad_ChipSeq_HeLa-S3_H3K4me1 H3K4me1 GSM736510 GSE29692,GSE51334 Stam_HeLa-S3_2 DHS GSM736564 GSE29692,GSE51334,GSE51336 Stam_HeLa-S3_1 DHS GSM748515 GSE30225,GSE30227 HelaS3_FAIRE_REP1 FAIRE GSM748516 GSE30225,GSE30227 HelaS3_FAIRE_REP2 FAIRE GSM748534 GSE30226,GSE30227,GSE32883 HelaS3_cMYC_REP2 MYC GSM748536 GSE30226,GSE30227,GSE32883 HelaS3_PolII_REP2 POL2 GSM748537 GSE30226,GSE30227,GSE32883 HelaS3_INPUT input GSM748533 GSE30226,GSE30227,GSE32883 HelaS3_cMYC_REP1 MYC GSM748535 GSE30226,GSE30227,GSE32883 HelaS3_PolII_REP1 POL2 GSM749721 GSE30263 Stam_HeLa-S3_Input_1 input GSM935535 GSE31477 Yale_ChipSeq_HeLa-S3_Input_IgG-mus input GSM935538 GSE31477 Yale_ChipSeq_HeLa-S3_Input_Naked_DNA input GSM935536 GSE31477 Yale_ChipSeq_HeLa-S3_Input_Large_Fragment input GSM935357 GSE31477 Yale_ChipSeq_HeLa-S3_IFNg30_Input_std input GSM935360 GSE31477 Yale_ChipSeq_HeLa-S3_IFNg30_STAT1_std STAT1 GSM817342 GSE31477 Yale_ChipSeq_HeLa-S3_Input_std input GSM818744 GSE31477 USC_ChipSeq_HeLa-S3_Input_UCDavis input GSM935339 GSE31477 Stanford_ChipSeq_HeLa-S3_Input_IgG-rab input GSM935537 GSE31477 Yale_ChipSeq_HeLa-S3_Input_MNase input GSM935561 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_USF2_IgG-mus USF2 GSM1003618 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_HCFC1_(NB100-68209)_IgG-rab HCFC1 GSM935435 GSE31477,GSE51334 Harvard_ChipSeq_HeLa-S3_BRF2_std BRF2 GSM935476 GSE31477,GSE51334 USC_ChipSeq_HeLa-S3_E2F6_std E2F6 GSM935508 GSE31477,GSE51334 Harvard_ChipSeq_HeLa-S3_NF-YA_IgG-rab NFYA GSM935436 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_Znf143_(16618-1-AP)_IgG-rab Znf143 GSM935500 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_p300_(SC-584)_IgG-rab EP300 GSM935342 GSE31477,GSE51334 Harvard_ChipSeq_HeLa-S3_TFIIIC-110_std TFIIIC-110 GSM935637 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_BAF155_IgG-mus BAF155 GSM935366 GSE31477,GSE51334 USC_ChipSeq_HeLa-S3_HA-E2F1_std E2F1 GSM935370 GSE31477,GSE51334 USC_ChipSeq_HeLa-S3_AP-2gamma_std AP-2gamma GSM935302 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_GCN5_std GCN5 GSM935511 GSE31477,GSE51334 Yale_ChipSeq_HeLa-S3_Brg1_IgG-mus Brg1 GSM935625 GSE31477,GSE51334 USC_ChipSeq_HeLa-S3_TCF7L2_C9B9_(2565)_UCDavis TCF7L2 GSM935570 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_IRF3_IgG-rab IRF3 GSM935351 GSE31477,GSE51334 USC_ChipSeq_HeLa-S3_ELK4_UCDavis ELK4 GSM935290 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_MafK_(ab50322)_IgG-rab MafK GSM935362 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_ZKSCAN1_(HPA006672)_IgG-rab ZKSCAN1 GSM935416 GSE31477,GSE51334 Harvard_ChipSeq_HeLa-S3_ZZZ3_std ZZZ3 GSM935606 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_TBP_IgG-rab TBP GSM935498 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_Mxi1_(AF4185)_IgG-rab Mxi1 GSM935553 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_CEBPB_IgG-rab CEBPB GSM935365 GSE31477,GSE51334 USC_ChipSeq_HeLa-S3_E2F4_std E2F4 GSM935384 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_SMC3_(ab9263)_IgG-rab SMC3 GSM935320 GSE31477,GSE51334 Yale_ChipSeq_HeLa-S3_c-Myc_std c-Myc GSM935459 GSE31477,GSE51334 USC_ChipSeq_HeLa-S3_ZNF274_UCDavis ZNF274 GSM935638 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_BAF170_IgG-mus BAF170 GSM935367 GSE31477,GSE51334 USC_ChipSeq_HeLa-S3_AP-2alpha_std AP-2a GSM935328 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_JunD_IgG-rab JunD GSM935318 GSE31477,GSE51334 Yale_ChipSeq_HeLa-S3_Max_std Max GSM935486 GSE31477,GSE51334 Harvard_ChipSeq_HeLa-S3_BDP1_std BDP1 GSM935432 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_CHD2_(AB68301)_IgG-rab CHD2 GSM935405 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_Max_IgG-rab Max GSM816436 GSE31477,GSE51334 USC_ChipSeq_HeLa-S3_TCF7L2_UCDavis TCF7L2 GSM935408 GSE31477,GSE51334 Harvard_ChipSeq_HeLa-S3_NF-YB_IgG-rab NFYB GSM935555 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_PRDM1_(9115)_IgG-rab PRDM1 GSM935615 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_SPT20_std SPT20 GSM935635 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_Ini1_IgG-mus Ini1 GSM935272 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_MAZ_(ab85725)_IgG-rab MAZ GSM935582 GSE31477,GSE51334 Harvard_ChipSeq_HeLa-S3_BRF1_std BRF1 GSM935383 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_Pol2(phosphoS2)_IgG-rab POL2 GSM935489 GSE31477,GSE51334 Harvard_ChipSeq_HeLa-S3_RPC155_std RPC155 GSM935636 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_Nrf1_IgG-mus Nrf1 GSM935317 GSE31477,GSE51334 Yale_ChipSeq_HeLa-S3_c-Fos_std cFos GSM935395 GSE31477,GSE51334 Yale_ChipSeq_HeLa-S3_Pol2_std POL2 GSM935369 GSE31477,GSE51334 USC_ChipSeq_HeLa-S3_TR4_std TR4 GSM935276 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_STAT3_IgG-rab STAT3 GSM935326 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_ELK1_(1277-1)_IgG-rab ELK1 GSM935552 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_BRCA1_(A300-000A)_IgG-rab BRCA1 GSM935554 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_GTF2F1_(AB28179)_IgG-rab GTF2F1 GSM935341 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_c-Jun_IgG-rab cJun GSM935560 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_RFX5_(200-401-194)_IgG-rab RFX5 GSM935578 GSE31477,GSE51334 Stanford_ChipSeq_HeLa-S3_COREST_(sc-30189)_IgG-rab COREST GSM935484 GSE31477,GSE51334 USC_ChipSeq_HeLa-S3_E2F1_std E2F1 GSM788633 GSE31794 H3.3 IP no FLAG GSM788635 GSE31794 input H3.3 input GSM788636 GSE31794 input H3.1 input GSM788634 GSE31794 H3.1 IP no FLAG GSM803479 GSE32465 HudsonAlpha_ChipSeq_HeLa-S3_RevXlinkChromatin_PCR1x RevXlinkChromatin GSM803478 GSE32465,GSE51334 HudsonAlpha_ChipSeq_HeLa-S3_NRSF_PCR1x NRSF GSM803533 GSE32465,GSE51334 HudsonAlpha_ChipSeq_HeLa-S3_Pol2_PCR1x POL2 GSM803454 GSE32465,GSE51334 HudsonAlpha_ChipSeq_HeLa-S3_GABP_PCR1x GABP GSM803455 GSE32465,GSE51334 HudsonAlpha_ChipSeq_HeLa-S3_TAF1_PCR1x TAF1 GSM816633 GSE32970 Duke_DnaseSeq_HeLa-S3_IFNa4h DHS GSM816643 GSE32970,GSE51334 Duke_DnaseSeq_HeLa-S3 DHS GSM818830 GSE33049,GSE33051 H2B K120 ub_ChIPSeq no H2B GSM818831 GSE33049,GSE33051 input DNA input GSM818829 GSE33049,GSE33051 H2B S112 GlcNAc_ChIPSeq no H2B GSM822313 GSE33213 UT-A_ChipSeq_HeLa-S3_Input input GSM822286 GSE33213,GSE51334 UT-A_ChipSeq_HeLa-S3_c-Myc Myc GSM822273 GSE33213,GSE51334 UT-A_ChipSeq_HeLa-S3_Pol2 POL2 GSM866199 GSE34785 Input HELA Sample 1 input GSM866196 GSE34785 HA-flag-Vezf1 ChIP-Seq Sample 1 no FLAG-M2 GSM866200 GSE34785 Input HELA Sample 2 input GSM866197 GSE34785 HA-flag-Vezf1 ChIP-Seq Sample 2 no FLAG-M2 GSM866198 GSE34785 RNA Polymerase 2 ChIP-Seq HELA GSM866199 POL2 GSM864359 GSE35239 UNC_FaireSeq_HeLa-S3_IFNg4h FAIRE GSM864348 GSE35239 UNC_FaireSeq_HeLa-S3 FAIRE GSM864356 GSE35239 UNC_FaireSeq_HeLa-S3_IFNa4h FAIRE GSM945253 GSE35583 UW_ChipSeq_HeLa-S3_Input input GSM922798 GSE37583 BrdU_IP Total DNA GSM922786 BrdU hg18, GSM922790 GSE37583 Orc1_ChIPseq GSM922786 Orc1 hg18, GSM922796 GSE37583 BrdU_RepliSeq S5 GSM922786 BrdU hg18, GSM922794 GSE37583 BrdU_RepliSeq S3 GSM922786 BrdU hg18, GSM922789 GSE37583 input DNA (low-density fractions) input hg18, GSM922795 GSE37583 BrdU_RepliSeq S4 GSM922786 BrdU hg18, GSM922786 GSE37583 input DNA input hg18, GSM922797 GSE37583 BrdU_RepliSeq S6 GSM922786 BrdU hg18, GSM922791 GSE37583 High-density fractions(fr14-15-16) input hg18, GSM922793 GSE37583 BrdU_RepliSeq S2 GSM922786 BrdU hg18, GSM922792 GSE37583 BrdU_RepliSeq S1 GSM922786 BrdU hg18, GSM959045 GSE39263 ChIP-seq_ZNF143_HeLa_rep1 ZNF143 hg19 and mm9, GSM959046 GSE39263 ChIP-seq_ZNF143_HeLa_rep2 ZNF143 hg19 and mm9, GSM1155628 GSE42951 Homotypic CenH3 (CenH3/CenH3) ChIP-seq no CenH3 hg19, GSM1053823 GSE42951 eCenH3 ChIP-seq (replicate 1) no FLAG M2 hg19, GSM1053824 GSE42951 eCenH3 ChIP-seq (replicate 2) no FLAG M2 hg19, GSM1155629 GSE42951 Heterotypic CenH3 (CenH3/H3) ChIP-seq no CenH3-H3 hg19, GSM1053820 GSE42951 WT CenH3 ChIP-seq (replicate 2) CENP-A hg19, GSM1053817 GSE42951 WT MNase input (replicate 1) input hg19, GSM1053818 GSE42951 WT MNase input (replicate 2) input hg19, GSM1053822 GSE42951 eCenH3 MNase input (replicate 2) input hg19, GSM1053821 GSE42951 eCenH3 MNase input (replicate 1) input hg19, GSM1053819 GSE42951 WT CenH3 ChIP-seq (replicate 1) CENP-A hg19, GSM1082937 GSE44309 Pol2_siINO80_ChIPseq POL2 hg19, GSM1082936 GSE44309 H2AX_siINO80_ChIPseq H2AX hg19, GSM1082935 GSE44309 H2AX_wtINO80_ChIPseq H2AX hg19, GSM1104352 GSE45441,GSE45489 HeLaS3.LSD1 GSM1104350 LSD1 hg19 (HeLaS3) or mm9, GSM1104362 GSE45441,GSE45489 HeLaS3.S.SFMBT1 GSM1104360 SFMBT1 hg19 (HeLaS3) or mm9, GSM1104353 GSE45441,GSE45489 HeLaS3.CoREST GSM1104350 COREST hg19 (HeLaS3) or mm9, GSM1104355 GSE45441,GSE45489 HeLaS3.G1.input input hg19 (HeLaS3) or mm9, GSM1104359 GSE45441,GSE45489 HeLaS3.G1.CoREST GSM1104355 COREST hg19 (HeLaS3) or mm9, GSM1104356 GSE45441,GSE45489 HeLaS3.G1.IgG input hg19 (HeLaS3) or mm9, GSM1104354 GSE45441,GSE45489 HeLaS3.H3K4me1 GSM1104350 H3K4me1 hg19 (HeLaS3) or mm9, GSM1104363 GSE45441,GSE45489 HeLaS3.S.LSD1 GSM1104360 LSD1 hg19 (HeLaS3) or mm9, GSM1104361 GSE45441,GSE45489 HeLaS3.S.IgG input hg19 (HeLaS3) or mm9, GSM1104351 GSE45441,GSE45489 HeLaS3.SFMBT1 GSM1104350 SFMBT1 hg19 (HeLaS3) or mm9, GSM1104357 GSE45441,GSE45489 HeLaS3.G1.SFMBT1 GSM1104355 SFMBT1 hg19 (HeLaS3) or mm9, GSM1104360 GSE45441,GSE45489 HeLaS3.S.input input hg19 (HeLaS3) or mm9, GSM1104358 GSE45441,GSE45489 HeLaS3.G1.LSD1 GSM1104355 LSD1 hg19 (HeLaS3) or mm9, GSM1104350 GSE45441,GSE45489 HeLaS3.input input hg19 (HeLaS3) or mm9, GSM1104364 GSE45441,GSE45489 HeLaS3.S.CoREST GSM1104360 COREST hg19 (HeLaS3) or mm9, GSM1259354 GSE52098,GSE52100 s_7 FOXM1 HG19, GSM1259355 GSE52098,GSE52100 s_8 FOXM1 HG19, GSM1414509 GSE58511 HeLaS3_emx1h_ChIP-seq GFP hg19, GSM1414510 GSE58511 HeLaS3_egfa-t1h_ChIP-seq GFP hg19, GSM1414508 GSE58511 HeLaS3_Controlh_ChIP-seq GFP hg19, GSM1563749 GSE63538,GSE64072 HeLa-S3_LATS2-/-_H3K27ac_ChIPSeq GSM1563752 H3K27ac Sequence reads for H3K27me3, H3K4me3, and input were aligned to the human genome (hg19) using the Bowtie software, GSM1563748 GSE63538,GSE64072 HeLa-S3_LATS2+/+_input DNA input Sequence reads for H3K27me3, H3K4me3, and input were aligned to the human genome (hg19) using the Bowtie software, GSM1563752 GSE63538,GSE64072 HeLa-S3_LATS2-/-_input DNA input Sequence reads for H3K27me3, H3K4me3, and input were aligned to the human genome (hg19) using the Bowtie software, GSM1563745 GSE63538,GSE64072 HeLa-S3_LATS2+/+_H3K27ac_ChIPSeq GSM1563748 H3K27ac Sequence reads for H3K27me3, H3K4me3, and input were aligned to the human genome (hg19) using the Bowtie software, GSM1592499 GSE65323 29_pMEK_control_repl_1 GSM2266101 Mek1/2 hg19, GSM1592485 GSE65323 13_Pol2_control_repl_1 GSM2266101 POL2 hg19, GSM1592492 GSE65323 20_pEGFR_EGF20_repl_2 GSM2266102 EGFR hg19, GSM1592497 GSE65323 25_IgG_control input hg19, GSM1592495 GSE65323 23_pERK_EGF20_repl_1 GSM2266102 Erk1/2 hg19, GSM1592493 GSE65323 21_pERK_control_repl_1 GSM2266101 Erk1/2 hg19, GSM1592500 GSE65323 30_pMEK_control_repl_2 GSM2266101 Mek1/2 hg19, GSM1592489 GSE65323 17_pEGFR_control_repl_1 GSM2266101 EGFR hg19, GSM1592502 GSE65323 32_pMEK_EGF20_repl_2 GSM2266102 Mek1/2 hg19, GSM2266102 GSE65323 EGF20 input hg19, GSM1592498 GSE65323 26_IgG_EGF20' input hg19, GSM2266101 GSE65323 CTRL input hg19, GSM1592491 GSE65323 19_pEGFR_EGF20_repl_1 GSM2266102 EGFR hg19, GSM1592487 GSE65323 15_Pol2_EGF20_repl_1 GSM2266102 POL2 hg19, GSM1592486 GSE65323 14_Pol2_control_repl_2 GSM2266101 POL2 hg19, GSM1592488 GSE65323 16_Pol2_EGF20_repl_2 GSM2266102 POL2 hg19, GSM1592490 GSE65323 18_pEGFR_control_repl_2 GSM2266101 EGFR hg19, GSM1592496 GSE65323 24_pERK_EGF20_repl_2 GSM2266102 Erk1/2 hg19, GSM1592501 GSE65323 31_pMEK_EGF20_repl_1 GSM2266102 Mek1/2 hg19, GSM1592494 GSE65323 22_pERK_control_repl_2 GSM2266101 Erk1/2 hg19, GSM2098411 GSE79563,GSE79565 input_ChIP-seq, 3 input hg19, GSM2098409 GSE79563,GSE79565 input_ChIP-seq, 1 input hg19, GSM2098410 GSE79563,GSE79565 input_ChIP-seq, 2 input hg19,