GSM3165250	Embryo_dome	NA	GSE114954		 embryodome		 dome	 Tu X AB	H3K27ac	ChIP-Seq	danRer7	RNA-seq data were firstly processed using Trim Galore! with default parameters to trim the adapter-containing and low quality reads.The filtered data were then mapped to the zebrafish reference genome (danRer7) by STAR (version: STAR_2.5.3a_modified) with following parameters: --outSAMstrandField intronMotif --outSAMattributes All --outSAMunmapped Within --outSAMattrIHstart 0 --outWigStrand Stranded --outFilterMultimapNmax 20 --twopassMode Basic.	dome_amanitin_H3K27ac_rep1	bd_0_1_2_6_dr10	UsingSRR
GSM3165237	Embryo_dome	NA	GSE114954		 embryodome		 dome	 Tu X AB	H3K27ac	ChIP-Seq	danRer7	RNA-seq data were firstly processed using Trim Galore! with default parameters to trim the adapter-containing and low quality reads.The filtered data were then mapped to the zebrafish reference genome (danRer7) by STAR (version: STAR_2.5.3a_modified) with following parameters: --outSAMstrandField intronMotif --outSAMattributes All --outSAMunmapped Within --outSAMattrIHstart 0 --outWigStrand Stranded --outFilterMultimapNmax 20 --twopassMode Basic.	dome_H3K27ac_rep1_seq1	bd_0_1_2_6_dr10	UsingSRR
GSM3165236	Embryo_dome	NA	GSE114954		 embryodome		 dome	 Tu X AB	H3K27ac	ChIP-Seq	danRer7	RNA-seq data were firstly processed using Trim Galore! with default parameters to trim the adapter-containing and low quality reads.The filtered data were then mapped to the zebrafish reference genome (danRer7) by STAR (version: STAR_2.5.3a_modified) with following parameters: --outSAMstrandField intronMotif --outSAMattributes All --outSAMunmapped Within --outSAMattrIHstart 0 --outWigStrand Stranded --outFilterMultimapNmax 20 --twopassMode Basic.	dome_H3K27ac_rep2	bd_0_1_2_6_dr10	UsingSRR
GSM3165249	Embryo_dome	NA	GSE114954		 embryodome		 dome	 Tu X AB	H3K27ac	ChIP-Seq	danRer7	RNA-seq data were firstly processed using Trim Galore! with default parameters to trim the adapter-containing and low quality reads.The filtered data were then mapped to the zebrafish reference genome (danRer7) by STAR (version: STAR_2.5.3a_modified) with following parameters: --outSAMstrandField intronMotif --outSAMattributes All --outSAMunmapped Within --outSAMattrIHstart 0 --outWigStrand Stranded --outFilterMultimapNmax 20 --twopassMode Basic.	dome_amanitin_H3K27ac_rep2	bd_0_1_2_6_dr10	UsingSRR
GSM3165238	Embryo_dome	NA	GSE114954		 embryodome		 dome	 Tu X AB	H3K27ac	ChIP-Seq	danRer7	RNA-seq data were firstly processed using Trim Galore! with default parameters to trim the adapter-containing and low quality reads.The filtered data were then mapped to the zebrafish reference genome (danRer7) by STAR (version: STAR_2.5.3a_modified) with following parameters: --outSAMstrandField intronMotif --outSAMattributes All --outSAMunmapped Within --outSAMattrIHstart 0 --outWigStrand Stranded --outFilterMultimapNmax 20 --twopassMode Basic.	dome_H3K27ac_rep1_seq2	bd_0_1_2_6_dr10	UsingSRR
GSM915197	Embryo_dome	NA	GSE32483	 whole embryo	H3K27ac_dome, danRer7		 dome		H3K27ac	ChIP-Seq	Zv9	Reads were mapped to the D. rerio genome (ENSEMBL version Zv9) with the ELAND software (from Illumina CASAVA 1.8.2) using default settings. Reads with 0 or 1 mismatch were kept.	H3K27ac_dome, danRer7	bd_0_1_2_6_dr10	UsingSRR
GSM803830	Embryo_dome	NA	GSE32483	 whole embryo	H3K27ac_dome, danRer6		 dome		H3K27ac	ChIP-Seq	Zv8	Reads were mapped to the D. rerio genome (ENSEMBL version Zv8) with the ELAND software (Ilumina pipeline). Only the alignments within 2 mismatches were included in further analysis.	H3K27ac_dome, danRer6	bd_0_1_2_6_dr10	UsingSRR
GSM915193	Embryo_dome	NA	GSE32483	 whole embryo	H3K4me1_dome, danRer7		 dome		H3K4me1	ChIP-Seq	Zv9	Reads were mapped to the D. rerio genome (ENSEMBL version Zv9) with the ELAND software (from Illumina CASAVA 1.8.2) using default settings. Reads with 0 or 1 mismatch were kept.	H3K4me1_dome, danRer7	bd_0_1_2_6_dr10	UsingSRR
GSM803826	Embryo_dome	NA	GSE32483	 whole embryo	H3K4me1_dome, danRer6		 dome		H3K4me1	ChIP-Seq	Zv8	Reads were mapped to the D. rerio genome (ENSEMBL version Zv8) with the ELAND software (Ilumina pipeline). Only the alignments within 2 mismatches were included in further analysis.	H3K4me1_dome, danRer6	bd_0_1_2_6_dr10	UsingSRR
GSM2837496	Embryo_dome	NA	GSE106431		whole embryo		 dome			ATAC-Seq	GRCz10	Alignment: reads were aligned against reference genome using Bowtie2 software.	ATACseq zebra dome replicate 2	bd_0_1_2_6_dr10	UsingSRR
GSM2837495	Embryo_dome	NA	GSE106431		whole embryo		 dome			ATAC-Seq	GRCz10	Alignment: reads were aligned against reference genome using Bowtie2 software.	ATACseq zebra dome replicate 1	bd_0_1_2_6_dr10	UsingSRR