GSM2845192	Embryo_5-6ss	NA	GSE106676	 Cells expressing Citrine and Cherry reporter from 5-6ss embryos	Cells expressing Citrine and Cherry reporter from 5-6ss embryos		 5-6ss	 TgBAC(foxd3-Avi-2A-Citrine)ox161 ;Tg(ubiq:NLS-BirA-2A-Cherry)ox114	BiotinChIP_BirA	ChIP-Seq	danRer10	ChIP-seq, Biotin-ChIP-seq, and ATAC-seq reads were trimmed for quality using sickle (v 1.33) and mapped using bowtie (v.1.0.0). Smoothened bigWig files were generated using a enhanced Perl script courtesy of Jim Hughes.	BiotinChIP_BirA	bd_0_1_2_6_dr10	UsingSRR
GSM2845190	Embryo_5-6ss	NA	GSE106676	 Cells expressing Citrine and Cherry reporter from 5-6ss embryos	Cells expressing Citrine and Cherry reporter from 5-6ss embryos		 5-6ss	 TgBAC(foxd3-Avi-2A-Citrine)ox161 ;Tg(ubiq:NLS-BirA-2A-Cherry)ox114	BiotinChIP_FoxD3_ChIP	ChIP-Seq	danRer10	ChIP-seq, Biotin-ChIP-seq, and ATAC-seq reads were trimmed for quality using sickle (v 1.33) and mapped using bowtie (v.1.0.0). Smoothened bigWig files were generated using a enhanced Perl script courtesy of Jim Hughes.	BiotinChIP_FoxD3_ChIP	bd_0_1_2_non_dr10	GSM2845190_biotin_foxd3_ChIP.bed.gz
GSM2845174	Embryo_5-6ss	NA	GSE106676	 Citrine reporter and Cherry reporter expressing cells from 14-16ss embryos	Citrine reporter and Cherry reporter expressing cells from 14-16ss embryos		 5-6ss	 Gt(foxd3-citrine)ct110; Gt(foxd3-mCherry)ct110R	H3K27ac	ChIP-Seq	danRer10	ChIP-seq, Biotin-ChIP-seq, and ATAC-seq reads were trimmed for quality using sickle (v 1.33) and mapped using bowtie (v.1.0.0). Smoothened bigWig files were generated using a enhanced Perl script courtesy of Jim Hughes.	ChIPseq_H3K27ac_NCC5-6ss_Citrine-Cherry	bd_0_1_2_non_dr10	GSM2845174_H3K27Ac_CitChe_peaks.bed.gz
GSM2845173	Embryo_5-6ss	NA	GSE106676	 Citrine reporter expressing cells from 5-6ss embryos	Citrine reporter expressing cells from 5-6ss embryos		 5-6ss	 Gt(foxd3-citrine)ct110	H3K27ac	ChIP-Seq	danRer10	ChIP-seq, Biotin-ChIP-seq, and ATAC-seq reads were trimmed for quality using sickle (v 1.33) and mapped using bowtie (v.1.0.0). Smoothened bigWig files were generated using a enhanced Perl script courtesy of Jim Hughes.	ChIPseq_H3K27ac_NCC5-6ss_Citrine	bd_0_1_2_non_dr10	GSM2845173_H3K27Ac_Citrine_peaks.bed.gz
GSM2845187	Embryo_5-6ss	NA	GSE106676	 Citrine reporter and Cherry reporter expressing cells from 5-6ss embryos	Citrine reporter and Cherry reporter expressing cells from 5-6ss embryos		 5-6ss	 Gt(foxd3-citrine)ct110; Gt(foxd3-mCherry)ct110R		ATAC-Seq	danRer10	ChIP-seq, Biotin-ChIP-seq, and ATAC-seq reads were trimmed for quality using sickle (v 1.33) and mapped using bowtie (v.1.0.0). Smoothened bigWig files were generated using a enhanced Perl script courtesy of Jim Hughes.	ATACseq_NCC_Citrine-Cherry_2	bd_1_2_3_non_dr10	GSM2845187_Jul_CC2.bed.gz
GSM2845186	Embryo_5-6ss	NA	GSE106676	 Citrine reporter and Cherry reporter expressing cells from 5-6ss embryos	Citrine reporter and Cherry reporter expressing cells from 5-6ss embryos		 5-6ss	 Gt(foxd3-citrine)ct110; Gt(foxd3-mCherry)ct110R		ATAC-Seq	danRer10	ChIP-seq, Biotin-ChIP-seq, and ATAC-seq reads were trimmed for quality using sickle (v 1.33) and mapped using bowtie (v.1.0.0). Smoothened bigWig files were generated using a enhanced Perl script courtesy of Jim Hughes.	ATACseq_NCC_Citrine-Cherry_1	bd_1_2_3_non_dr10	GSM2845186_Jul_CC1.bed.gz
GSM2845185	Embryo_5-6ss	NA	GSE106676	 Citrine reporter expressing cells from 5-6ss embryos	Citrine reporter expressing cells from 5-6ss embryos		 5-6ss	 Gt(foxd3-citrine)ct110		ATAC-Seq	danRer10	ChIP-seq, Biotin-ChIP-seq, and ATAC-seq reads were trimmed for quality using sickle (v 1.33) and mapped using bowtie (v.1.0.0). Smoothened bigWig files were generated using a enhanced Perl script courtesy of Jim Hughes.	ATACseq_NCC_Citrine_2	bd_1_2_3_non_dr10	GSM2845185_Jul_C2.bed.gz