GSM915200	Embryo_48hpf	NA	GSE32483	 whole embryo	H3K27ac_48hpf, danRer7		 48hpf		H3K27ac	ChIP-Seq	Zv9	Reads were mapped to the D. rerio genome (ENSEMBL version Zv9) with the ELAND software (from Illumina CASAVA 1.8.2) using default settings. Reads with 0 or 1 mismatch were kept.	H3K27ac_48hpf, danRer7	bd_0_1_2_6_dr10	UsingSRR
GSM803833	Embryo_48hpf	NA	GSE32483	 whole embryo	H3K27ac_48hpf, danRer6		 48hpf		H3K27ac	ChIP-Seq	Zv8	Reads were mapped to the D. rerio genome (ENSEMBL version Zv8) with the ELAND software (Ilumina pipeline). Only the alignments within 2 mismatches were included in further analysis.	H3K27ac_48hpf, danRer6	bd_0_1_2_6_dr10	UsingSRR
GSM915196	Embryo_48hpf	NA	GSE32483	 whole embryo	H3K4me1_48hpf, danRer7		 48hpf		H3K4me1	ChIP-Seq	Zv9	Reads were mapped to the D. rerio genome (ENSEMBL version Zv9) with the ELAND software (from Illumina CASAVA 1.8.2) using default settings. Reads with 0 or 1 mismatch were kept.	H3K4me1_48hpf, danRer7	bd_0_1_2_6_dr10	UsingSRR
GSM803829	Embryo_48hpf	NA	GSE32483	 whole embryo	H3K4me1_48hpf, danRer6		 48hpf		H3K4me1	ChIP-Seq	Zv8	Reads were mapped to the D. rerio genome (ENSEMBL version Zv8) with the ELAND software (Ilumina pipeline). Only the alignments within 2 mismatches were included in further analysis.	H3K4me1_48hpf, danRer6	bd_0_1_2_6_dr10	UsingSRR
GSM3396553	Embryo_48hpf	NA	GSE120238	 FACS-sorted embryo cells	FACS-sorted embryo cells		 48 hpf			ATAC-Seq	GRCz10	Nextera adapters removal was performed by using Trimmomatic (0.36) (Bolger et al. 2014)	wt_ATACseq_GFPpos_48hpf_rep2	bd_0_1_2_6_dr10	UsingSRR
GSM3396552	Embryo_48hpf	NA	GSE120238	 FACS-sorted embryo cells	FACS-sorted embryo cells		 48 hpf			ATAC-Seq	GRCz10	Nextera adapters removal was performed by using Trimmomatic (0.36) (Bolger et al. 2014)	wt_ATACseq_GFPpos_48hpf_rep1	bd_0_1_2_6_dr10	UsingSRR
GSM2837490	Embryo_48hpf	NA	GSE106431		whole embryo		 48hpf			ATAC-Seq	GRCz10	Alignment: reads were aligned against reference genome using Bowtie2 software.	ATACseq zebra 48 hpf replicate 2	bd_0_1_2_6_dr10	UsingSRR
GSM2837489	Embryo_48hpf	NA	GSE106431		whole embryo		 48hpf			ATAC-Seq	GRCz10	Alignment: reads were aligned against reference genome using Bowtie2 software.	ATACseq zebra 48 hpf replicate 1	bd_0_1_2_6_dr10	UsingSRR