GSM3132640	embryo_6-8	GSM3132639	GSE114092,GSE114209,		Stage 11 embryos		 stage 11 embryo,		Guinea pig Yan 	ChIP-Seq	 dm3,	 Guinea pig anti-Yan antibody (1:500), Webber et al. (2013) Genetics, 193:633-649	Yan_ChIP	bd_0_1_2_6_dm3	UsingSRR						
GSM3132644	embryo_6-8	GSM3132643	GSE114092,GSE114209,		Stage 11 embryos		 stage 11 embryo,		Groucho 	ChIP-Seq	 dm3,	 anti-Groucho antibody (1:200), Negre et al. (2011) Nature, 471:527-531	Gro_ChIP	bd_0_1_2_6_dm3	UsingSRR						
GSM3132648	embryo_6-8	GSM3132647	GSE114092,GSE114209,		Stage 11 embryos		 stage 11 embryo,		rabbit GFP 	ChIP-Seq	 dm3,	 rabbit anti-GFP antibody (1:100), Invitrogen A6455, Lot# 1603336	Pnt-GFP_ChIP	bd_0_1_2_6_dm3	UsingSRR						
GSM2860547	embryo_6-8		GSE101581,	 whole embryo,	Nuclei isolated from whole embryos 		 6 to 8 hours after egg laying,			DNase	 dm3,	 6 to 8 hours after egg laying	6-8hr WE Drosophila embryo nuclei DNAse-seq	bw_0_1_2_4_dm3	GSM2860547_13-2-15_6-8_WE.bw						
GSM2860549	embryo_6-8		GSE101581,	 Mef2+ nuclei,	Nuclei isolated from whole embryos Mef2+		 6 to 8 hours after egg laying,			DNase	 dm3,	 6 to 8 hours after egg laying	6-8hr Mef2+ Drosophila embryo nuclei DNAse-seq	bw_0_1_2_4_dm3	GSM2860549_13-2-15_6-8_mef.bw						
GSM2860548	embryo_6-8		GSE101581,	 elav+ nuclei,	Nuclei isolated from whole embryos elav+		 6 to 8 hours after egg laying,			DNase	 dm3,	 6 to 8 hours after egg laying	6-8hr elav+ Drosophila embryo nuclei DNAse-seq	bw_0_1_2_4_dm3	GSM2860548_13-2-15_6-8_elav.bw						
GSM2706365	embryo_6-8		GSE101581,	 whole embryos,	Nuclei isolated from whole embryos		 2 to 4 hours after egg laying, 6 to 8 hours after egg laying, 10 to 12 hours after egg laying,			ATAC-Seq	 dm3,	 whole embryos	Drosophila nuclei sci-ATAC-seq	bd_0_1_2_6_dm3	UsingSRR						
GSM2203847	embryo_6-8		GSE83463,	 sorted midline cells,	6-8 hour embryos		 6-8 hours after egg laying,	GFP,		FAIRE	 dm3,	GFP	MF_6-8hr_FAIRE_Rep1	bd_0_1_2_4_dm3	ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83463/suppl/GSE83463_MF_top10K_FAIRE_pooled_peaks.bed.gz						
GSM2203849	embryo_6-8		GSE83463,	 whole embryo,	6-8 hour embryos		 6-8 hours after egg laying,	 OregonR,		FAIRE	 dm3,	 OregonR	EF_6-8hr_FAIRE_Rep1	bd_0_1_2_4_dm3	ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83463/suppl/GSE83463_EF_top10K_FAIRE_pooled_peaks.bed.gz						
GSM1545797	embryo_6-8	GSM1545800	GSE63323,		whole embryos				ELAV	ChIP-Seq	 dm3,	hours after fertilization: 6-8	ELAV 6-8h rep2	bg_0_1_2_4_dm3	GSM1545797_Elav_6to8_2.ucsc.bedGraph.gz						
GSM1545796	embryo_6-8	GSM1545800	GSE63323,		whole embryos				ELAV	ChIP-Seq	 dm3,	hours after fertilization: 6-8	ELAV 6-8h rep1	bg_0_1_2_4_dm3	GSM1545796_Elav_6to8_1.ucsc.bedGraph.gz						
GSM948713	embryo_6-8		GSE38727,	 whole embryo,	6-8 hour embryos		 6-8 hours after egg laying,	 OregonR,		FAIRE	 dm3,	 OregonR	e6-8hr_faire	bd_0_1_2_4_dm3	GSM948713_e6-8hr_FAIRE_peaks.bed.gz						
GSM840894	embryo_6-8	GSM840895	GSE34040,	 embryo,	Stage 11 Drosophila embryos		 Stage 11,		gp Yan	ChIP-Seq	 dm3,	 embryo	Yan_ChIPSeq	bd_0_1_2_7_dm3	GSM840894_Yan_s23_1e-5_peaks.txt.gz						
GSM941540	embryo_6-8	GSM941541	GSE38402,		 sorted primary mesodermal,Lmd2_ChIPSeq		 2 hour embryo collection spanning late stage 11 to early stage 12,		Lmd2	ChIP-Seq	 dm3,	 Lmd2 [Cunha et al. 2010 PLoS Genet 6(7): e1001014]	Lmd2_ChIPSeq	bd_0_1_2_6_dm3	UsingSRR						
GSM941539	embryo_6-8	GSM941541	GSE38402,		 sorted primary mesodermal,Lmd1_ChIPSeq		 2 hour embryo collection spanning late stage 11 to early stage 12,		Lmd1	ChIP-Seq	 dm3,	 Lmd1 [Cunha et al. 2010 PLoS Genet 6(7): e1001014]	Lmd1_ChIPSeq	bd_0_1_2_6_dm3	UsingSRR