GSM2711351 S2 GSM2711367 GSE101646, Drosophila S2 cells Drosophila S2 cells, H3K27ac ChIP-Seq dm3, mm9, hg19, Drosophila S2 cells dm3.h3k27ac.dsBrwd.rnai.2.exp1 bw_0_1_2_4_dm3 GSM2711351_dm3.h3k27ac.dsBrwd.rnai.2.exp1.bw GSM2711350 S2 GSM2711368 GSE101646, Drosophila S2 cells Drosophila S2 cells, H3K27ac ChIP-Seq dm3, mm9, hg19, Drosophila S2 cells dm3.h3k27ac.dsBrwd.rnai.1.exp2 bw_0_1_2_4_dm3 GSM2711350_dm3.h3k27ac.dsBrwd.rnai.1.exp2.bw GSM2711349 S2 GSM2711367 GSE101646, Drosophila S2 cells Drosophila S2 cells, H3K27ac ChIP-Seq dm3, mm9, hg19, Drosophila S2 cells dm3.h3k27ac.dsBrwd.rnai.1.exp1 bw_0_1_2_4_dm3 GSM2711349_dm3.h3k27ac.dsBrwd.rnai.1.exp1.bw GSM2711353 S2 GSM2711348 GSE101646, Drosophila S2 cells Drosophila S2 cells, H3K27ac ChIP-Seq dm3, mm9, hg19, Drosophila S2 cells dm3.h3k27ac.dsLacZ.exp1 bw_0_1_2_4_dm3 GSM2711353_dm3.h3k27ac.dsLacZ.exp1.bw GSM2711354 S2 GSM2711348 GSE101646, Drosophila S2 cells Drosophila S2 cells, H3K27ac ChIP-Seq dm3, mm9, hg19, Drosophila S2 cells dm3.h3k27ac.dsLacZ.exp2 bw_0_1_2_4_dm3 GSM2711354_dm3.h3k27ac.dsLacZ.exp2.bw GSM2711352 S2 GSM2711368 GSE101646, Drosophila S2 cells Drosophila S2 cells, H3K27ac ChIP-Seq dm3, mm9, hg19, Drosophila S2 cells dm3.h3k27ac.dsBrwd.rnai.2.exp2 bw_0_1_2_4_dm3 GSM2711352_dm3.h3k27ac.dsBrwd.rnai.2.exp2.bw GSM2711356 S2 GSM2711368 GSE101646, Drosophila S2 cells Drosophila S2 cells, H3K4me1 ChIP-Seq dm3, mm9, hg19, Drosophila S2 cells dm3.h3k4me1.dsBrwd.rnai.1.exp2 bw_0_1_2_4_dm3 GSM2711356_dm3.h3k4me1.dsBrwd.rnai.1.exp2.bw GSM2711355 S2 GSM2711367 GSE101646, Drosophila S2 cells Drosophila S2 cells, H3K4me1 ChIP-Seq dm3, mm9, hg19, Drosophila S2 cells dm3.h3k4me1.dsBrwd.rnai.1.exp1 bw_0_1_2_4_dm3 GSM2711355_dm3.h3k4me1.dsBrwd.rnai.1.exp1.bw GSM2711359 S2 GSM2711348 GSE101646, Drosophila S2 cells Drosophila S2 cells, H3K4me1 ChIP-Seq dm3, mm9, hg19, Drosophila S2 cells dm3.h3k4me1.dsLacZ.exp1 bw_0_1_2_4_dm3 GSM2711359_dm3.h3k4me1.dsLacZ.exp1.bw GSM2711358 S2 GSM2711368 GSE101646, Drosophila S2 cells Drosophila S2 cells, H3K4me1 ChIP-Seq dm3, mm9, hg19, Drosophila S2 cells dm3.h3k4me1.dsBrwd.rnai.2.exp2 bw_0_1_2_4_dm3 GSM2711358_dm3.h3k4me1.dsBrwd.rnai.2.exp2.bw GSM2711357 S2 GSM2711367 GSE101646, Drosophila S2 cells Drosophila S2 cells, H3K4me1 ChIP-Seq dm3, mm9, hg19, Drosophila S2 cells dm3.h3k4me1.dsBrwd.rnai.2.exp1 bw_0_1_2_4_dm3 GSM2711357_dm3.h3k4me1.dsBrwd.rnai.2.exp1.bw GSM2711360 S2 GSM2711348 GSE101646, Drosophila S2 cells Drosophila S2 cells, H3K4me1 ChIP-Seq dm3, mm9, hg19, Drosophila S2 cells dm3.h3k4me1.dsLacZ.exp2 bw_0_1_2_4_dm3 GSM2711360_dm3.h3k4me1.dsLacZ.exp2.bw GSM774083 S2 GSM945898 GSE31226, DRSC-S2 cell line DRSC-S2, Hsp90 ChIP-Seq DRSC-S2 S2-DRSC-ChIP-Hsp90_replicate_1 bd_0_1_2_8_dm3 GSM774083_hsp90_a_peaks.bed.gz GSM774084 S2 GSM945899 GSE31226, DRSC-S2 cell line DRSC-S2, Hsp90 ChIP-Seq DRSC-S2 S2-DRSC-ChIP-Hsp90_replicate_2 bd_0_1_2_8_dm3 GSM774084_hsp90_b_peaks.bed.gz GSM604725 S2 GSM604731 GSE24521, DRSC-S2 cell line DRSC-S2, Ph ChIP-Seq DRSC-S2 S2-DRSC-ChIP-Ph replicate 1 bd_0_1_2_6_dm3 UsingSRR GSM604727 S2 GSM604731 GSE24521, DRSC-S2 cell line DRSC-S2, Psc ChIP-Seq DRSC-S2 S2-DRSC-ChIP-Psc replicate 1 bd_0_1_2_6_dm3 UsingSRR GSM604724 S2 GSM604732 GSE24521, DRSC-S2 cell line DRSC-S2, Pc ChIP-Seq DRSC-S2 S2-DRSC-ChIP-Pc replicate 2 bd_0_1_2_6_dm3 UsingSRR GSM604723 S2 GSM604731 GSE24521, DRSC-S2 cell line DRSC-S2, Pc ChIP-Seq DRSC-S2 S2-DRSC-ChIP-Pc replicate 1 bd_0_1_2_6_dm3 UsingSRR GSM604726 S2 GSM604732 GSE24521, DRSC-S2 cell line DRSC-S2, Ph ChIP-Seq DRSC-S2 S2-DRSC-ChIP-Ph replicate 2 bd_0_1_2_6_dm3 UsingSRR GSM604730 S2 GSM604732 GSE24521, DRSC-S2 cell line DRSC-S2, Trx-C ChIP-Seq DRSC-S2 S2-DRSC-ChIP-Trx-C replicate 2 bd_0_1_2_6_dm3 UsingSRR GSM604728 S2 GSM604732 GSE24521, DRSC-S2 cell line DRSC-S2, Psc ChIP-Seq DRSC-S2 S2-DRSC-ChIP-Psc replicate 2 bd_0_1_2_6_dm3 UsingSRR GSM604729 S2 GSM604731 GSE24521, DRSC-S2 cell line DRSC-S2, Trx-C ChIP-Seq DRSC-S2 S2-DRSC-ChIP-Trx-C replicate 1 bd_0_1_2_6_dm3 UsingSRR GSM1572833 S2 GSE64507, S2 cells hemocyte-like cell line S2, MNase-Seq UCSC.dm3, hemocyte-like cell line S2 S2 repB_0hr bd_0_1_2_6_dm3 UsingSRR GSM1572829 S2 GSE64507, S2 cells hemocyte-like cell line S2, MNase-Seq UCSC.dm3, hemocyte-like cell line S2 S2 repA_0hr bd_0_1_2_6_dm3 UsingSRR GSM2706047 S2 GSM2706072 GSE101554,GSE101557, S2 Cell line late embryo-derived cell line, S2-DRSC, Rpb3 ChIP-Seq dm3, late embryo-derived cell line S2_Rpb3_ChIPSeq_Rep1 bd_0_1_2_6_dm3 UsingSRR GSM2706048 S2 GSM2706073 GSE101554,GSE101557, S2 Cell line late embryo-derived cell line, S2-DRSC, Rpb3 ChIP-Seq dm3, late embryo-derived cell line S2_Rpb3_ChIPSeq_Rep2 bd_0_1_2_6_dm3 UsingSRR GSM2706051 S2 GSM2706072 GSE101554,GSE101557, S2 Cell line late embryo-derived cell line, S2-DRSC, POLR2A ChIP-Seq dm3, late embryo-derived cell line S2_PolII_phosphoSer2_ChIPSeq_Rep1 bd_0_1_2_6_dm3 UsingSRR GSM2706052 S2 GSM2706073 GSE101554,GSE101557, S2 Cell line late embryo-derived cell line, S2-DRSC, POLR2A ChIP-Seq dm3, late embryo-derived cell line S2_PolII_phosphoSer2_ChIPSeq_Rep2 bd_0_1_2_6_dm3 UsingSRR GSM2706056 S2 GSM2706073 GSE101554,GSE101557, S2 Cell line late embryo-derived cell line, S2-DRSC, M1BP ChIP-Seq dm3, late embryo-derived cell line S2_M1BP_ChIPSeq_Rep2 bd_0_1_2_6_dm3 UsingSRR GSM2706055 S2 GSM2706072 GSE101554,GSE101557, S2 Cell line late embryo-derived cell line, S2-DRSC, M1BP ChIP-Seq dm3, late embryo-derived cell line S2_M1BP_ChIPSeq_Rep1 bd_0_1_2_6_dm3 UsingSRR GSM2706059 S2 GSM2706072 GSE101554,GSE101557, S2 Cell line late embryo-derived cell line, S2-DRSC, GAGA ChIP-Seq dm3, late embryo-derived cell line S2_GAGA_ChIPSeq_Rep1 bd_0_1_2_6_dm3 UsingSRR GSM2706060 S2 GSM2706073 GSE101554,GSE101557, S2 Cell line late embryo-derived cell line, S2-DRSC, GAGA ChIP-Seq dm3, late embryo-derived cell line S2_GAGA_ChIPSeq_Rep2 bd_0_1_2_6_dm3 UsingSRR GSM2706064 S2 GSM2706073 GSE101554,GSE101557, S2 Cell line late embryo-derived cell line, S2-DRSC, dRing ChIP-Seq dm3, late embryo-derived cell line S2_dRing_ChIPSeq_Rep2 bd_0_1_2_6_dm3 UsingSRR GSM2706067 S2 GSM2706072 GSE101554,GSE101557, S2 Cell line late embryo-derived cell line, S2-DRSC, E ChIP-Seq dm3, late embryo-derived cell line S2_E(z)_ChIPSeq_Rep1 bd_0_1_2_6_dm3 UsingSRR GSM2706063 S2 GSM2706072 GSE101554,GSE101557, S2 Cell line late embryo-derived cell line, S2-DRSC, dRing ChIP-Seq dm3, late embryo-derived cell line S2_dRing_ChIPSeq_Rep1 bd_0_1_2_6_dm3 UsingSRR GSM2706068 S2 GSM2706073 GSE101554,GSE101557, S2 Cell line late embryo-derived cell line, S2-DRSC, E ChIP-Seq dm3, late embryo-derived cell line S2_E(z)_ChIPSeq_Rep2 bd_0_1_2_6_dm3 UsingSRR GSM561053 S2 GSM561054 GSE22623, S2 cells S2 cell line, AGO2 mAb 9D6 ChIP-Seq S2 cell line AGO2 S2 ChIP-seq rep1 bd_0_1_2_non_dm3 GSM561053_s2_ago2_FDR_5.bed.gz GSM2500498 S2 GSM2500500 GSE95236, Endogenous BRM IP S2 cells, Monoclonal Drosophila BRM ChIP-Seq dm3, S2 cells Endogenous BRM IP rep 2 bd_0_1_2_6_dm3 UsingSRR GSM2500497 S2 GSM2500499 GSE95236, Endogenous BRM IP S2 cells, Monoclonal Drosophila BRM ChIP-Seq dm3, S2 cells Endogenous BRM IP rep 1 bd_0_1_2_6_dm3 UsingSRR GSM2536237 S2 GSM2536243 GSE96581, S2 cells S2 cells, CP190 ChIP-Seq dm3, S2 cells CP190 ChIP-seq (control) bw_0_1_2_4_dm3 GSM2536237_CP190_control_dm3.bw GSM2332920 S2 GSM2332923 GSE87509, S2_2xlink Atro ChIP-seq S2 cells, Rabbit Atro sera, raised in rabbit, Atro ChIP-Seq BDGP release 5, S2 cells 2xlink Atro ChIP-seq rep 1, 3-11-14 bd_0_1_2_6_dm3 UsingSRR GSM2332921 S2 GSM2332924 GSE87509, S2_2xlink Atro ChIP-seq S2 cells, Rabbit Atro sera, raised in rabbit, Atro ChIP-Seq BDGP release 5, S2 cells 2xlink Atro ChIP-seq rep 2, 3-13-14 bd_0_1_2_6_dm3 UsingSRR GSM2332922 S2 GSM2332925 GSE87509, S2_2xlink Atro ChIP-seq S2 cells, Rabbit Atro sera, raised in rabbit, Atro ChIP-Seq BDGP release 5, S2 cells 2xlink Atro ChIP-seq rep 3, 3-19-14 bd_0_1_2_6_dm3 UsingSRR GSM1193810 S2 GSM1193813 GSE49102,GSE49104, S2 cells S2 cells, rabbit ¦ÁWOC ChIP-Seq dm3, type: IP WOC bd_0_1_2_non_dm3 GSM1193810_WOC.bed.gz GSM1193812 S2 GSM1193813 GSE49102,GSE49104, S2 cells S2 cells, guinea pig ¦ÁZ4 ChIP-Seq dm3, type: IP Z4 bd_0_1_2_non_dm3 GSM1193812_Z4.bed.gz GSM1193811 S2 GSM1193813 GSE49102,GSE49104, S2 cells S2 cells, rabbit ¦ÁROW ChIP-Seq dm3, type: IP ROW bd_0_1_2_non_dm3 GSM1193811_ROW.bed.gz GSM1193815 S2 GSM1193813 GSE49102,GSE49104, S2 cells S2 cells, rabbit ¦ÁHP1c ChIP-Seq dm3, type: IP Dsk2 bd_0_1_2_non_dm3 GSM1193815_Dsk2.bed.gz GSM1193816 S2 GSM1193813 GSE49102,GSE49104, S2 cells S2 cells, rabbit ¦ÁDsk2 ChIP-Seq dm3, type: IP HP1c bd_0_1_2_non_dm3 GSM1193816_HP1c.bed.gz GSM2592581 S2 GSE98351, MNase DNA S2 DRSC, MNase S2 DRSC dsSpt16_80mM_MNaseSEQ_(2016-04-14,2016-05-17_SR_Dm_80mM_1) bd_0_1_2_6_dm3 UsingSRR GSM2592580 S2 GSE98351, MNase DNA S2 DRSC, MNase S2 DRSC dsGFP_80mM_MNaseSEQ_(2016-04-14,2016-05-17_SR_Dm_80mM_4) bd_0_1_2_6_dm3 UsingSRR GSM2592582 S2 GSE98351, MNase DNA S2 DRSC, MNase S2 DRSC dsSpt6_80mM_MNaseSEQ_(2016-04-14,2016-05-17_SR_Dm_80mM_3) bd_0_1_2_6_dm3 UsingSRR GSM2592583 S2 GSE98351, MNase DNA S2 DRSC, MNase S2 DRSC dsSSRP_80mM_MNaseSEQ_(2016-04-14,2016-05-17_SR_Dm_80mM_2) bd_0_1_2_6_dm3 UsingSRR GSM1015404 S2 GSM1015412 GSE41354,GSE50769, S2 cells S2 DRSC: Schneider's line 2, CP190 ChIP-Seq , CP190 antibody (rabbit) Ct_CP190 bd_0_1_2_7_dm3 GSM1015404_CtCP190_peaks.bed.gz GSM1015405 S2 GSM1015413 GSE41354,GSE50769, S2 cells S2 DRSC: Schneider's line 2, CP190 ChIP-Seq , CP190 antibody (rabbit) 3AB_CP190 bd_0_1_2_7_dm3 GSM1015405_AbCP190_peaks.bed.gz GSM1015406 S2 GSM1015412 GSE41354,GSE50769, S2 cells S2 DRSC: Schneider's line 2, Su 406 ChIP-Seq , Su(Hw) antibody 406 (rabbit) Ct_Su(Hw) bd_0_1_2_7_dm3 GSM1015406_CtSuHw_peaks.bed.gz GSM1015409 S2 GSM1015413 GSE41354,GSE50769, S2 cells S2 DRSC: Schneider's line 2, Mod2.2 ChIP-Seq , Mod(mdg4)2.2 antibody (rabbit) 3AB_Mod bd_0_1_2_7_dm3 GSM1015409_AbMod_peaks.bed.gz GSM1015407 S2 GSM1015413 GSE41354,GSE50769, S2 cells S2 DRSC: Schneider's line 2, Su 406 ChIP-Seq , Su(Hw) antibody 406 (rabbit) 3AB_Su(Hw) bd_0_1_2_7_dm3 GSM1015407_AbSuHw_peaks.bed.gz GSM1015408 S2 GSM1015412 GSE41354,GSE50769, S2 cells S2 DRSC: Schneider's line 2, Mod2.2 ChIP-Seq , Mod(mdg4)2.2 antibody (rabbit) Ct_Mod bd_0_1_2_7_dm3 GSM1015408_CtMod_peaks.bed.gz GSM1376607 S2 GSE57165,GSE57168, Late embryonic derived S2 cells,wild-type cells - anti-RNAPII S2 Schneider cells, POLR2A ChIP-Seq Flybase release 5.41, Late embryonic derived S2 cells Pol2_WT bd_0_1_2_6_dm3 UsingSRR GSM1376610 S2 GSE57166,GSE57168, Late embryonic derived S2 cells,wild-type control S2 Schneider cells, MNase Flybase release 5.41, Late embryonic derived S2 cells Nuc/MNase-Seq-WT ctrl- S2 Cells bd_0_1_2_6_dm3 UsingSRR GSM3262119 S2 GSM3262118 GSE116806,GSE116808, UPF1 ChIP DNA from normal S2 cells S2, UPF1 ChIP-Seq Dm6, S2 UPF1_ChIPseq 1 bg_0_1_2_4_dm6 GSM3262119_UPF1_CHIP1.bedGraph.gz GSM3262120 S2 GSM3262118 GSE116806,GSE116808, UPF1 ChIP DNA from normal S2 cells S2, UPF1 ChIP-Seq Dm6, S2 UPF1_ChIPseq 2 bg_0_1_2_4_dm6 GSM3262120_UPF1_CHIP2.bedGraph.gz GSM3262122 S2 GSM3262118 GSE116806,GSE116808, Pol II Ser2 ChIP in Normal S2 cells S2, POLR2A ChIP-Seq Dm6, S2 Pol II Ser2_ChIPseq in Wild type 1 bg_0_1_2_4_dm6 GSM3262122_Ser2_control1.bedGraph.gz GSM3262124 S2 GSM3262118 GSE116806,GSE116808, Pol II Ser2 ChIP in Normal S2 cells S2, POLR2A ChIP-Seq Dm6, S2 Pol II Ser2_ChIPseq in Wild type 2 bg_0_1_2_4_dm6 GSM3262124_Ser2_control2.bedGraph.gz GSM3381129 S2 GSE119708, S2 cells S2, ATAC-Seq dm6, S2 ATAC_S2_untreated_4 bd_0_1_2_4_dm6 GSM3381129_ATAC_S2_untreated_4_cov.bw GSM3381127 S2 GSE119708, S2 cells S2, ATAC-Seq dm6, S2 ATAC_S2_untreated_2 bd_0_1_2_4_dm6 GSM3381127_ATAC_S2_untreated_2_cov.bw GSM3381128 S2 GSE119708, S2 cells S2, ATAC-Seq dm6, S2 ATAC_S2_untreated_3 bd_0_1_2_4_dm6 GSM3381128_ATAC_S2_untreated_3_cov.bw GSM3381126 S2 GSE119708, S2 cells S2, ATAC-Seq dm6, S2 ATAC_S2_untreated_1 bd_0_1_2_4_dm6 GSM3381126_ATAC_S2_untreated_1_cov.bw GSM2756641 S2 GSE103177, S2 cells S2, ATAC-Seq dm6 or ce6, S2 s2 cell ATAC-seq rep2 bd_0_1_2_4_dm6 GSM2756641_s2_ATAC_copy.bw GSM2756640 S2 GSE103177, S2 cells S2, ATAC-Seq dm6 or ce6, S2 s2 cell ATAC-seq rep1 bd_0_1_2_4_dm6 GSM2756640_s2_ATAC.bw GSM2259976 S2 GSE85191, Drosophila S2 cells S2, POLR2A ChIP-Seq dm3 (ChIP-seq, RNA-seq, 4sU, start-seq), mm9, S2 Adelman_Dmel_S2_RNAPolII_ChIP-seq_control_rep2 bd_0_1_2_6_dm3 UsingSRR GSM2259975 S2 GSE85191, Drosophila S2 cells S2, POLR2A ChIP-Seq dm3 (ChIP-seq, RNA-seq, 4sU, start-seq), mm9, S2 Adelman_Dmel_S2_RNAPolII_ChIP-seq_control_rep1 bd_0_1_2_6_dm3 UsingSRR GSM2259983 S2 GSE85191, Drosophila S2 cells S2, H3K4me1 ChIP-Seq dm3 (ChIP-seq, RNA-seq, 4sU, start-seq), mm9, S2 Adelman_Dmel_S2_H3K4me1_ChIP-seq_rep1 bd_0_1_2_6_dm3 UsingSRR GSM2259984 S2 GSE85191, Drosophila S2 cells S2, H3K4me1 ChIP-Seq dm3 (ChIP-seq, RNA-seq, 4sU, start-seq), mm9, S2 Adelman_Dmel_S2_H3K4me1_ChIP-seq_rep2 bd_0_1_2_6_dm3 UsingSRR GSM2259987 S2 GSE85191, Drosophila S2 cells S2, H3K27ac ChIP-Seq dm3 (ChIP-seq, RNA-seq, 4sU, start-seq), mm9, S2 Adelman_Dmel_S2_H3K27ac_ChIP-seq_rep1 bd_0_1_2_6_dm3 UsingSRR GSM2259988 S2 GSE85191, Drosophila S2 cells S2, H3K27ac ChIP-Seq dm3 (ChIP-seq, RNA-seq, 4sU, start-seq), mm9, S2 Adelman_Dmel_S2_H3K27ac_ChIP-seq_rep2 bd_0_1_2_6_dm3 UsingSRR GSM1588216 S2 GSM1588217 GSE65150, S2-DRSC cell line S2, DRSC, goat Su pAb ChIP-Seq dm3-BDGP Release 5, DRSC Su(H)_ChIPSeq bd_0_1_2_4_dm3 GSM1588216_SuH_peaks.bed.gz GSM2592578 S2 GSE98351, MNase DNA S2, MNase S2 S2_MNaseSEQ_(2014-06-17,2016-09-09_SR_Dm_total_All) bd_0_1_2_6_dm3 UsingSRR GSM2469507 S2 GSM2469506 GSE94115, S2 cells S2, MSL2 ChIP-Seq BDGP 5.74, S2 ChIP MSL2 S2 rep1 [Sample 86] bg_0_1_2_4_dm3 GSM2469507_141031_SL2Z_3d_MSL2.norm.bedGraph.gz GSM2469512 S2 GSM2469511 GSE94115, S2 cells S2, MSL2 ChIP-Seq BDGP 5.74, S2 ChIP MSL2 S2 rep3 [Sample 91] bg_0_1_2_4_dm3 GSM2469512_141001_6d_SL2Z_MSL2.norm.bedGraph.gz GSM2469514 S2 GSM2469513 GSE94115, S2 cells S2, MSL2 ChIP-Seq BDGP 5.74, S2 ChIP MSL2 S2 rep4 [Sample 93] bg_0_1_2_4_dm3 GSM2469514_141001_9d_SL2Z_MSL2.norm.bedGraph.gz GSM2469510 S2 GSM2469509 GSE94115, S2 cells S2, MSL2 ChIP-Seq BDGP 5.74, S2 ChIP MSL2 S2 rep2 [Sample 89] bg_0_1_2_4_dm3 GSM2469510_141001_3d_SL2Z_MSL2.norm.bedGraph.gz GSM2319005 S2 GSM2319001 GSE87022, Drosophila S2 cells, WT, DnaJ1 ChIP S2, DnaJ1 ChIP-Seq dm3, S2 DnaJ1 ChIP 1 from WCE 1 bw_0_1_2_4_dm3 GSM2319005_dnaj1.bw GSM2319006 S2 GSM2319003 GSE87022, Drosophila S2 cells, WT, DnaJ1 ChIP S2, DnaJ1 ChIP-Seq dm3, S2 DnaJ1 ChIP 2 from WCE 2 bw_0_1_2_4_dm3 GSM2319006_dnaj2.bw GSM2319002 S2 GSM2319007 GSE87022, Drosophila S2 cells, WT, MLF ChIP S2, MLF ChIP-Seq dm3, S2 MLF ChIP 1 from WCE 3 bw_0_1_2_4_dm3 GSM2319002_mlf1.bw GSM2319004 S2 GSM2319003 GSE87022, Drosophila S2 cells, WT, MLF ChIP S2, MLF ChIP-Seq dm3, S2 MLF ChIP 2 from WCE 2 bw_0_1_2_4_dm3 GSM2319004_mlf2.bw GSM2175500 S2 GSM2175513 GSE81795, embryo-derived,S2 S2, H3K27ac ChIP-Seq dm3, embryo-derived dm3_dsLacZ_H3K27ac_140226_rep1 bw_0_1_2_4_dm3 GSM2175500_dm3_dsLacZ_H3K27ac_140226_rep1.bw GSM2175505 S2 GSM2175512 GSE81795, embryo-derived,S2 S2, H3K4me1 ChIP-Seq dm3, embryo-derived dm3_dsLacZ_H3K4me1_140127_rep2 bw_0_1_2_4_dm3 GSM2175505_dm3_dsLacZ_H3K4me1_140127_rep2.bw GSM2175516 S2 GSM2175511 GSE81795, embryo-derived,S2 S2, Trr ChIP-Seq dm3, embryo-derived dm3_dsLacZ_Trr_131016_rep2 bw_0_1_2_4_dm3 GSM2175516_dm3_dsLacZ_Trr_131016_rep2.bw GSM2175517 S2 GSM2175510 GSE81795, embryo-derived,S2 S2, TrxCT ChIP-Seq dm3, embryo-derived dm3_dsLacZ_TrxCT_130915_rep1 bw_0_1_2_4_dm3 GSM2175517_dm3_dsLacZ_TrxCT_130915_rep1.bw GSM2175519 S2 GSM2175510 GSE81795, embryo-derived,S2 S2, TrxNT ChIP-Seq dm3, embryo-derived dm3_dsLacZ_TrxNT_130915_rep1 bw_0_1_2_4_dm3 GSM2175519_dm3_dsLacZ_TrxNT_130915_rep1.bw GSM2175520 S2 GSM2175511 GSE81795, embryo-derived,S2 S2, TrxNT ChIP-Seq dm3, embryo-derived dm3_dsLacZ_TrxNT_131016_rep2 bw_0_1_2_4_dm3 GSM2175520_dm3_dsLacZ_TrxNT_131016_rep2.bw GSM2175522 S2 GSM2175511 GSE81795, embryo-derived,S2 S2, dSet1 ChIP-Seq dm3, embryo-derived dm3_dsLacZ_dSet1_131016_rep2 bw_0_1_2_4_dm3 GSM2175522_dm3_dsLacZ_dSet1_131016_rep2.bw GSM2175518 S2 GSM2175511 GSE81795, embryo-derived,S2 S2, TrxCT ChIP-Seq dm3, embryo-derived dm3_dsLacZ_TrxCT_131016_rep2 bw_0_1_2_4_dm3 GSM2175518_dm3_dsLacZ_TrxCT_131016_rep2.bw GSM2175521 S2 GSM2175510 GSE81795, embryo-derived,S2 S2, dSet1 ChIP-Seq dm3, embryo-derived dm3_dsLacZ_dSet1_130915_rep1 bw_0_1_2_4_dm3 GSM2175521_dm3_dsLacZ_dSet1_130915_rep1.bw GSM2175526 S2 GSM2175531 GSE81795, embryo-derived,S2 S2, H3K27ac ChIP-Seq dm3, embryo-derived dm3_dsTrx_1_H3K27ac_151208_rep2 bw_0_1_2_4_dm3 GSM2175526_dm3_dsTrx_1_H3K27ac_151208_rep2.bw GSM2175528 S2 GSM2175531 GSE81795, embryo-derived,S2 S2, H3K4me1 ChIP-Seq dm3, embryo-derived dm3_dsTrx_1_H3K4me1_140127_rep2 bw_0_1_2_4_dm3 GSM2175528_dm3_dsTrx_1_H3K4me1_140127_rep2.bw GSM2175533 S2 GSM2175538 GSE81795, embryo-derived,S2 S2, H3K27ac ChIP-Seq dm3, embryo-derived dm3_dsTrx_2_H3K27ac_140226_rep1 bw_0_1_2_4_dm3 GSM2175533_dm3_dsTrx_2_H3K27ac_140226_rep1.bw GSM2175535 S2 GSM2175538 GSE81795, embryo-derived,S2 S2, H3K4me1 ChIP-Seq dm3, embryo-derived dm3_dsTrx_2_H3K4me1_130821_rep1 bw_0_1_2_4_dm3 GSM2175535_dm3_dsTrx_2_H3K4me1_130821_rep1.bw GSM1974520 S2 GSE76120, Input S2, MNase-Seq S2 Long_term_labeling_input_(2015-11-19.6) bd_0_1_2_6_dm3 UsingSRR GSM1617057 S2 GSM1617059 GSE66212, S2 cells S2, MYST51 ChIP-Seq dm3, chipseq antibody: rabbit anti MYST5 (1) MYST5_ChIPseq1 bd_0_1_2_6_dm3 UsingSRR GSM1617058 S2 GSM1617059 GSE66212, S2 cells S2, MYST52 ChIP-Seq dm3, chipseq antibody: rabbit anti MYST5 (2) MYST5_ChIPseq2 bd_0_1_2_6_dm3 UsingSRR GSM1571854 S2 GSM1571853 GSE64464, S2 cells S2, affinity-purified guinea-pig raised aa 1-178 in Drosophila CBP ChIP-Seq Drosophila melanogaster genome release 5, affinity-purified guinea-pig antibody raised against aa 1-178 in Drosophila CBP (nejire) CBP-gp ChIP-seq bd_0_1_2_6_dm3 UsingSRR GSM1571852 S2 GSM1571851 GSE64464, S2 cells S2, affinity-purified rabbit raised aa 2540-3190 in Drosophila CBP ChIP-Seq Drosophila melanogaster genome release 5, affinity-purified rabbit antibody raised against aa 2540-3190 in Drosophila CBP (nejire) CBP-rb ChIP-seq bd_0_1_2_6_dm3 UsingSRR GSM1575683 S2 GSE58821, cultured fruit fly cells S2, MNase-Seq dm3, S2 MNase GST bw_0_1_2_4_dm3 GSM1575683_GSL.SeqDepthNorm.bw GSM1694819 S2 GSE69177,GSE69336, S2 cells S2, MNase dm3, S2 S2_cells_genomic_DNA_MNase_rep1 bg_0_1_2_4_dm3 GSM1694819_S2_cells_genomic_DNA_MNase_rep1.bedGraph.gz GSM1694820 S2 GSE69177,GSE69336, S2 cells S2, MNase dm3, S2 S2_cells_genomic_DNA_MNase_rep2 bg_0_1_2_4_dm3 GSM1694820_S2_cells_genomic_DNA_MNase_rep2.bedGraph.gz GSM1626772 S2 GSM1626770 GSE66639,GSE66640, Drosophila S2-RRP6-V5 cells grown in Schneider medium S2, V5,dsrna GFP ChIP-Seq dm3, S2 ChIP_RRP6_WT_IP bd_0_1_2_6_dm3 UsingSRR GSM1727115 S2 GSM1727117 GSE70408, Drosophila?melanogaster?cell line,S2 S2, Rpb1 ChIP-Seq UCSC hg19, Drosophila?melanogaster?cell line dRpb1_dsPAF1.1_S2_rep1_ChIPSeq bw_0_1_2_4_dm3 GSM1727115_dRpb1_dsPAF1.1_S2_rep1_ChIPSeq.bw GSM1727114 S2 GSM1727116 GSE70408, Drosophila?melanogaster?cell line,S2 S2, Rpb1 ChIP-Seq UCSC hg19, Drosophila?melanogaster?cell line dRpb1_dsLacZ_S2_rep1_ChIPSeq bw_0_1_2_4_dm3 GSM1727114_dRpb1_dsLacZ_S2_rep1_ChIPSeq.bw GSM1621075 S2 GSE66367, hemocyte-like cell line,S2 cells S2, MNase-Seq UCSC.dm3, hemocyte-like cell line S2 repA light digest 0 h bd_0_1_2_non_dm3 GSM1621075_SAA0L.bed.gz GSM1621071 S2 GSE66367, hemocyte-like cell line,S2 cells S2, MNase-Seq UCSC.dm3, hemocyte-like cell line S2 repA heavy digest 0 h bd_0_1_2_non_dm3 GSM1621071_SAA0H.bed.gz GSM1621079 S2 GSE66367, hemocyte-like cell line,S2 cells S2, MNase-Seq UCSC.dm3, hemocyte-like cell line S2 repB heavy digest 0 h bd_0_1_2_non_dm3 GSM1621079_SAB0H.bed.gz GSM1621083 S2 GSE66367, hemocyte-like cell line,S2 cells S2, MNase-Seq UCSC.dm3, hemocyte-like cell line S2 repB light digest 0 h bd_0_1_2_non_dm3 GSM1621083_SAB0L.bed.gz GSM1313421 S2 GSM1313422 GSE54337, S2 cells S2, ZIPIC ChIP-Seq dm3, anti-ZIPIC ChIP-seq of ZIPIC in S2 cells bd_0_1_2_non_dm3 GSM1313421_ZIPIC_rangerpeaks_region.txt.gz GSM1313420 S2 GSM1313422 GSE54337, S2 cells S2, Pita ChIP-Seq dm3, anti-Pita ChIP-seq of Pita in S2 cells bd_0_1_2_non_dm3 GSM1313420_Pita_rangerpeaks_region.txt.gz GSM1128467 S2 GSM1128469 GSE46305, S2 cell line ChIP; Yki antibody S2, S2 (embryo cell line), Yki ChIP-Seq dm3, S2 (embryo cell line) Yki S2 ChIP rep1 bd_0_1_2_6_dm3 UsingSRR GSM1128468 S2 GSM1128469 GSE46305, S2 cell line ChIP; Yki antibody S2, S2 (embryo cell line), Yki ChIP-Seq dm3, S2 (embryo cell line) Yki S2 ChIP rep2 bd_0_1_2_6_dm3 UsingSRR GSM1133265 S2 GSM1133262 GSE46614,GSE47559, S2 cells S2, CG9740 ChIP-Seq dm3, sample type: IP CG9740 bd_0_1_2_non_dm3 GSM1133265_284_peaks.bed.gz GSM1133264 S2 GSM1133262 GSE46614,GSE47559, S2 cells S2, CG8436 ChIP-Seq dm3, sample type: IP CG8436 bd_0_1_2_non_dm3 GSM1133264_283_peaks.bed.gz GSM1133263 S2 GSM1133262 GSE46614,GSE47559, S2 cells S2, CP190 ChIP-Seq dm3, sample type: IP CP190 bd_0_1_2_non_dm3 GSM1133263_282_peaks.bed.gz GSM1333826 S2 GSM1333829 GSE55303, Velo 2 S2, Velo ChIP-Seq dm3, Velo ChIP-Seq Analysis of Velo in S2 cells, second replicate bd_0_1_2_6_dm3 UsingSRR GSM1333825 S2 GSM1333829 GSE55303, Velo 1 S2, Velo ChIP-Seq dm3, Velo ChIP-Seq Analysis of Velo in S2 cells, first replicate bd_0_1_2_6_dm3 UsingSRR GSM1333827 S2 GSM1333829 GSE55303, PC 1 S2, Polycomb ChIP-Seq dm3, Polycomb ChIP-Seq Analysis of PC in S2 cells, first replicate bd_0_1_2_6_dm3 UsingSRR GSM1333828 S2 GSM1333829 GSE55303, PC 2 S2, Polycomb ChIP-Seq dm3, Polycomb ChIP-Seq Analysis of PC in S2 cells, second replicate bd_0_1_2_6_dm3 UsingSRR GSM1239358 S2 GSM1239357 GSE51134,GSE51138, S2 cells S2, monoclonal to Ago2, gift from M. Siomi ChIP-Seq dm3, Mouse monoclonal to Ago2, gift from M. Siomi Ago2 IP Rep 1 bd_0_1_2_6_dm3 UsingSRR GSM1239359 S2 GSM1239357 GSE51134,GSE51138, S2 cells S2, monoclonal to Ago2, gift from M. Siomi ChIP-Seq dm3, Mouse monoclonal to Ago2, gift from M. Siomi Ago2 IP Rep2 bd_0_1_2_6_dm3 UsingSRR GSM936116 S2 GSM936120 GSE38166, S2 cell line S2, PSC custom made that was affinity purified ChIP-Seq dm3, S2 PSC_control_S2_ChIPSeq replicate 1 bd_0_1_2_4_dm3 GSM936116_PSC_control_S2_ChIPSeq_replicate_1.bed.gz GSM936117 S2 GSM936121 GSE38166, S2 cell line S2, PSC custom made that was affinity purified ChIP-Seq dm3, S2 PSC_control_S2_ChIPSeq replicate 2 bd_0_1_2_4_dm3 GSM936117_PSC_control_S2_ChIPSeq_replicate_2.bed.gz GSM796328 S2 GSM796332 GSE32120, S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab, S2, in house Rabbit ELL-MR ChIP-Seq S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab ELL ChIP-Seq bd_0_1_2_7_dm3 GSM796328_ell_peaks.bed.gz GSM796333 S2 GSM796334 GSE32120, S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab, S2, in house Rabbit ELL-fl ChIP-Seq S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab ELL-309 ChIP-Seq bd_0_1_2_7_dm3 GSM796333_ell-309_peaks.bed.gz GSM796329 S2 GSM796332 GSE32120, S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab, S2, in house Rabbit Ice1 ChIP-Seq S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab Ice1 ChIP-Seq bd_0_1_2_7_dm3 GSM796329_ice1_peaks.bed.gz GSM796331 S2 GSM796332 GSE32120, S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab, S2, POLR2A ChIP-Seq S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab Pol2 ChIP-Seq bd_0_1_2_7_dm3 GSM796331_pol2_peaks.bed.gz GSM796330 S2 GSM796332 GSE32120, S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab, S2, in house Guinea Pig Lilli-CT ChIP-Seq S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab Lilli ChIP-Seq bd_0_1_2_7_dm3 GSM796330_lilli_peaks.bed.gz GSM692422 S2 GSM692423 GSE22623, S2 cells S2, antiAGO2 pAb Mueller ChIP-Seq antiAGO2 pAb Mueller [PMID:16934003] AGO2 Mueller S2 ChIP-seq rep2 bd_0_1_2_6_dm3 UsingSRR GSM685611 S2 GSM685605 GSE27679, S2 cell line S2, SuHw ChIP-Seq S2 SuHw-p1a..p1b bd_0_1_2_6_dm3 UsingSRR GSM685610 S2 GSM685604 GSE27679, S2 cell line S2, SuHw ChIP-Seq S2 SuHw-s1..s7 bd_0_1_2_6_dm3 UsingSRR GSM480159 S2 GSE19325, S2 cells S2, ATCC, CLR-1963, Lot#5054622, POLR2A ChIP-Seq S2, ATCC, CLR-1963, Lot#5054622 S2 Pol II ChIP-seq bd_0_1_2_non_dm3 GSM480159_dm3-S2-PolII.bed.gz GSM2293621 S2 GSM2293623 GSE86106, HP1a, Drosophila S2 cells S2-DRSC, HP1a C1A9 ChIP-Seq dm3, S2-DRSC HP1a_2 bw_0_1_2_4_dm3 GSM2293621_HP1a_2_log2.bw GSM2293626 S2 GSM2293627 GSE86106, HP1a, Drosophila S2 cells S2-DRSC, HP1a C1A9 ChIP-Seq dm3, S2-DRSC HP1a_4 bw_0_1_2_4_dm3 GSM2293626_HP1a_4.bw GSM1974514 S2 GSE76120, Input S2-DRSC, MNase-Seq S2-DRSC dsGFP_input_(2015-05-13.5,2015-05-21.5) bd_0_1_2_6_dm3 UsingSRR GSM1296168 S2 GSM1296166 GSE53560, embryo-derived cell-line, dMyc S2 late embryo ChIP Rep.2 S2-DRSC, late embryonic stage, dMyc S2-DRSC late embryonic D.melanogaster ChIP Rep2 ChIP-Seq S2-DRSC dMyc S2-DRSC late embryonic D.melanogaster ChIP Rep2 bd_0_1_2_6_dm3 UsingSRR GSM1217665 S2 GSM1217663 GSE50366, embryo-derived cell-line, H3K4me1_S2_cells_ChIP-seq_ChIP_Rep1 S2-DRSC, late embryonic stage, H3K4me1 ChIP-Seq S2-DRSC H3K4me1_S2_cells_ChIP-seq_ChIP_Rep1 bd_0_1_2_6_dm3 UsingSRR GSM1217666 S2 GSM1217664 GSE50366, embryo-derived cell-line, H3K4me1_S2_cells_ChIP-seq_ChIP_Rep2 S2-DRSC, late embryonic stage, H3K4me1 ChIP-Seq S2-DRSC H3K4me1_S2_cells_ChIP-seq_ChIP_Rep2 bd_0_1_2_6_dm3 UsingSRR GSM1217658 S2 GSM1217656 GSE50364, embryo-derived cell-line, CG8478_S2_cells_ChIP-seq_ChIP_Rep2 S2-DRSC, late embryonic stage, CG8478_S2_cells_ChIP-seq_ChIP ChIP-Seq S2-DRSC CG8478_S2_cells_ChIP-seq_ChIP_Rep2 bd_0_1_2_6_dm3 UsingSRR GSM1217657 S2 GSM1217655 GSE50364, embryo-derived cell-line, CG8478_S2_cells_ChIP-seq_ChIP_Rep1 S2-DRSC, late embryonic stage, CG8478_S2_cells_ChIP-seq_ChIP ChIP-Seq S2-DRSC CG8478_S2_cells_ChIP-seq_ChIP_Rep1 bd_0_1_2_6_dm3 UsingSRR GSM2443786 S2 GSM2443795 GSE93100, late embryos, somatic cell,WT S2 cells Schneider 2 cell-line, fly Ash1 from rabbit ChIP-Seq dm3, Schneider 2 cell-line Ash1-ChIP-in-WT-S2-rep1 bw_0_1_2_4_dm3 GSM2443786_Ash1-in-WT.rep1.bigwig GSM2443787 S2 GSM2443795 GSE93100, late embryos, somatic cell,WT S2 cells Schneider 2 cell-line, fly Ash1 from rabbit ChIP-Seq dm3, Schneider 2 cell-line Ash1-ChIP-in-WT-S2-rep2 bw_0_1_2_4_dm3 GSM2443787_Ash1-in-WT.rep2.bigwig GSM2443791 S2 GSM2443795 GSE93100, late embryos, somatic cell,WT S2 cells Schneider 2 cell-line, fly Mrg15 from rabbit ChIP-Seq dm3, Schneider 2 cell-line Mrg15-ChIP-in-WT-S2-rep2 bw_0_1_2_4_dm3 GSM2443791_Mrg15-in-WT.rep2.bigwig GSM2443790 S2 GSM2443795 GSE93100, late embryos, somatic cell,WT S2 cells Schneider 2 cell-line, fly Mrg15 from rabbit ChIP-Seq dm3, Schneider 2 cell-line Mrg15-ChIP-in-WT-S2-rep1 bw_0_1_2_4_dm3 GSM2443790_Mrg15-in-WT.rep1.bigwig GSM2443794 S2 GSM2443795 GSE93100, late embryos, somatic cell,WT S2 cells Schneider 2 cell-line, input ChIP-Seq dm3, Schneider 2 cell-line IgG-ctrl-ChIP-in-WT-S2 bw_0_1_2_4_dm3 GSM2443794_IgG-ctrl-WT-S2.bigwig GSM577244 S2 GSE23543,GSE23544, untreated GRO-seq Schneider Line 2 (S2), GRO-seq Schneider Line 2 (S2) untreated GRO-seq 1+2 other UsingSRR GSM577243 S2 GSE23542,GSE23544, Pol II ChIP-seq Schneider Line 2 (S2), POLR2A ChIP-Seq Schneider Line 2 (S2) Pol II (rpb3) ChIP-seq 1+2 bg_0_1_2_4_dm3 GSM577243_Pol2_ChIP_Adelman.bedGraph.gz GSM577245 S2 GSE23543,GSE23544, mock_RNAi GRO-seq Schneider Line 2 (S2), GRO-seq Schneider Line 2 (S2) mock_RNAi GRO-seq 1+2 other UsingSRR GSM767964 S2 GSM767963 GSE30997, PH-ChIP d5 Schneider S2, [E-MTAB-652] PH-ChIP d5 ChIP-Seq material type: cell [E-MTAB-652] PH-ChIP d5 bd_0_1_2_6_dm3 UsingSRR GSM2238595 S2 GSM2238598 GSE84502, Schneider's Drosophila Line 2 (SL2) cells, s2-cells-pho SL2, Pho ChIP-Seq dm3, Schneider's Drosophila Line 2 (SL2) cells Pho ChIP-seq in S2 cells bg_0_1_2_4_dm3 GSM2238595_s2-cells-pho.bedgraph.gz GSM3344591 S2 GSE118726, cultured fruit fly cells MNase source developmental stage: embryonic cell line (S2) MNase_exp1_GST_rep2 bw_0_1_2_4_dm3 GSM3344591_LamHo_MNase_exp1_GST_rep2.bw GSM3344590 S2 GSE118726, cultured fruit fly cells MNase source developmental stage: embryonic cell line (S2) MNase_exp1_GST_rep1 bw_0_1_2_4_dm3 GSM3344590_LamHo_MNase_exp1_GST_rep1.bw GSM3073957 S2 GSE112608, Schneider 2 cells,S2 POLR2A ChIP-Seq Schneider 2 cells PolII_468_S2_25_rep2 bw_0_1_2_4_dm3 GSM3073957_PolII_468_S2_25_rep2.bw GSM3073958 S2 GSE112608, Schneider 2 cells,S2 POLR2A ChIP-Seq Schneider 2 cells PolII_468_S2_37_rep1 bw_0_1_2_4_dm3 GSM3073958_PolII_468_S2_37_rep1.bw GSM3073956 S2 GSE112608, Schneider 2 cells,S2 POLR2A ChIP-Seq Schneider 2 cells PolII_468_S2_25_rep1 bw_0_1_2_4_dm3 GSM3073956_PolII_468_S2_25_rep1.bw GSM3073959 S2 GSE112608, Schneider 2 cells,S2 POLR2A ChIP-Seq Schneider 2 cells PolII_468_S2_37_rep2 bw_0_1_2_4_dm3 GSM3073959_PolII_468_S2_37_rep2.bw GSM3073968 S2 GSE112608, Schneider 2 cells,S2 POLR2A ChIP-Seq Schneider 2 cells PolII_522_S2_25_rep1 bw_0_1_2_4_dm3 GSM3073968_PolII_522_S2_25_rep1.bw GSM3073969 S2 GSE112608, Schneider 2 cells,S2 POLR2A ChIP-Seq Schneider 2 cells PolII_522_S2_25_rep2 bw_0_1_2_4_dm3 GSM3073969_PolII_522_S2_25_rep2.bw GSM3073971 S2 GSE112608, Schneider 2 cells,S2 POLR2A ChIP-Seq Schneider 2 cells PolII_522_S2_37_rep2 bw_0_1_2_4_dm3 GSM3073971_PolII_522_S2_37_rep2.bw GSM3073970 S2 GSE112608, Schneider 2 cells,S2 POLR2A ChIP-Seq Schneider 2 cells PolII_522_S2_37_rep1 bw_0_1_2_4_dm3 GSM3073970_PolII_522_S2_37_rep1.bw GSM2849562 S2 GSM2849563 GSE104059, Embryo-derived cell-line, Embryo-derived cell-line Late embryonic stage, BioTAP-N-Br140 ChIP-Seq dm3, Embryo-derived cell-line BioTAP-N-Br140_IP_S2_replicate1 bd_0_1_2_6_dm3 UsingSRR GSM2849564 S2 GSM2849565 GSE104059, Embryo-derived cell-line, Embryo-derived cell-line Late embryonic stage, BioTAP-N-Fsh ChIP-Seq dm3, Embryo-derived cell-line BioTAP-N-Fs(1)h_IP_S2_replicate1 bd_0_1_2_6_dm3 UsingSRR GSM2849566 S2 GSM2849567 GSE104059, Embryo-derived cell-line, Embryo-derived cell-line Late embryonic stage, BioTAP-C-Fsh ChIP-Seq dm3, Embryo-derived cell-line BioTAP-C-Fs(1)h_IP_S2_replicate1 bd_0_1_2_6_dm3 UsingSRR GSM2740051 S2 GSE102520, S2 Schneider cells POLR2A ChIP-Seq FB2017_02 Dmel Release 6.15, time of 20h-ecdysone treatment: sham-treated PolII_Ser5(Phospho)_0h bw_0_1_2_4_dm6 GSM2740051_PolII_Ser5_Phospho_0h.bw GSM2740049 S2 GSE102520, S2 Schneider cells POLR2A ChIP-Seq FB2017_02 Dmel Release 6.15, time of 20h-ecdysone treatment: sham-treated PolII_Ser2(Phospho)_0h bw_0_1_2_4_dm6 GSM2740049_PolII_Ser2_Phospho_0h.bw GSM2688950 S2 GSM2688949 GSE100613,GSE100614, S2 cells Drosophila TFIIB from Jim Kadonaga . ChIP-Seq Drosophila melanogaster genome release 5, Drosophila TFIIB antibody from Jim Kadonaga (UCSD). TFIIB ChIP-seq C37 control rep1 bd_0_1_2_6_dm3 UsingSRR GSM2688952 S2 GSM2688951 GSE100613,GSE100614, S2 cells Drosophila TFIIB from Jim Kadonaga . ChIP-Seq Drosophila melanogaster genome release 5, Drosophila TFIIB antibody from Jim Kadonaga (UCSD). TFIIB ChIP-seq C37 control rep2 bd_0_1_2_6_dm3 UsingSRR GSM2688945 S2 GSE100612,GSE100614, S2 cells MNase Drosophila melanogaster genome release 5, mnase: MNase digestion MNase-seq C37 control rep1 bd_0_1_2_6_dm3 UsingSRR GSM2688946 S2 GSE100612,GSE100614, S2 cells MNase Drosophila melanogaster genome release 5, mnase: MNase digestion MNase-seq C37 control rep2 bd_0_1_2_6_dm3 UsingSRR GSM2521721 S2 GSE95689, S2 cell,UPR-induced S2 cells, T0, traditional occupancy MNase-Seq dm3, S2 cell S2 T0 rep2 traditional occupancy bg_0_1_2_4_dm3 GSM2521721_T0.trad.nucs.occ.r2.bedgraph.gz GSM2521720 S2 GSE95689, S2 cell,UPR-induced S2 cells, T0, traditional occupancy MNase-Seq dm3, S2 cell S2 T0 rep1 traditional occupancy bg_0_1_2_4_dm3 GSM2521720_T0.trad.nucs.occ.r1.bedgraph.gz GSM2521725 S2 GSE95689, S2 cell,UPR-induced S2 cells, T4, traditional occupancy MNase-Seq dm3, S2 cell S2 T4 rep2 traditional occupancy bg_0_1_2_4_dm3 GSM2521725_T4.trad.nucs.occ.r2.bedgraph.gz GSM2521723 S2 GSE95689, S2 cell,UPR-induced S2 cells, T1, traditional occupancy MNase-Seq dm3, S2 cell S2 T1 rep2 traditional occupancy bg_0_1_2_4_dm3 GSM2521723_T1.trad.nucs.occ.r2.bedgraph.gz GSM2521726 S2 GSE95689, S2 cell,UPR-induced S2 cells, T0 ATAC-seq ATAC-Seq dm3, S2 cell S2 T0 ATAC-seq rep1 bg_0_1_2_4_dm3 GSM2521726_T0.ATACseq.r1.bedgraph.gz GSM2521724 S2 GSE95689, S2 cell,UPR-induced S2 cells, T4, traditional occupancy MNase-Seq dm3, S2 cell S2 T4 rep1 traditional occupancy bg_0_1_2_4_dm3 GSM2521724_T4.trad.nucs.occ.r1.bedgraph.gz GSM2521722 S2 GSE95689, S2 cell,UPR-induced S2 cells, T1, traditional occupancy MNase-Seq dm3, S2 cell S2 T1 rep1 traditional occupancy bg_0_1_2_4_dm3 GSM2521722_T1.trad.nucs.occ.r1.bedgraph.gz GSM2521729 S2 GSE95689, S2 cell,UPR-induced S2 cells, T1 ATAC-seq ATAC-Seq dm3, S2 cell S2 T1 ATAC-seq rep2 bg_0_1_2_4_dm3 GSM2521729_T1.ATACseq.r2.bedgraph.gz GSM2521730 S2 GSE95689, S2 cell,UPR-induced S2 cells, T4 ATAC-seq ATAC-Seq dm3, S2 cell S2 T4 ATAC-seq rep1 bg_0_1_2_4_dm3 GSM2521730_T4.ATACseq.r1.bedgraph.gz GSM2521731 S2 GSE95689, S2 cell,UPR-induced S2 cells, T4 ATAC-seq ATAC-Seq dm3, S2 cell S2 T4 ATAC-seq rep2 bg_0_1_2_4_dm3 GSM2521731_T4.ATACseq.r2.bedgraph.gz GSM2521728 S2 GSE95689, S2 cell,UPR-induced S2 cells, T1 ATAC-seq ATAC-Seq dm3, S2 cell S2 T1 ATAC-seq rep1 bg_0_1_2_4_dm3 GSM2521728_T1.ATACseq.r1.bedgraph.gz GSM2521727 S2 GSE95689, S2 cell,UPR-induced S2 cells, T0 ATAC-seq ATAC-Seq dm3, S2 cell S2 T0 ATAC-seq rep2 bg_0_1_2_4_dm3 GSM2521727_T0.ATACseq.r2.bedgraph.gz GSM2521732 S2 GSM2521738 GSE95689, S2 cell,UPR-induced S2 cells, T0 H3K27ac ChIP H3K27ac ChIP-Seq dm3, S2 cell S2 T0 H3K27ac ChIP rep1 bg_0_1_2_4_dm3 GSM2521732_T0.H3K27ac.ChIP.r1.bedgraph.gz GSM2521733 S2 GSM2521739 GSE95689, S2 cell,UPR-induced S2 cells, T0 H3K27ac ChIP H3K27ac ChIP-Seq dm3, S2 cell S2 T0 H3K27ac ChIP rep2 bg_0_1_2_4_dm3 GSM2521733_T0.H3K27ac.ChIP.r2.bedgraph.gz GSM2521736 S2 GSM2521742 GSE95689, S2 cell,UPR-induced S2 cells, T4 H3K27ac ChIP H3K27ac ChIP-Seq dm3, S2 cell S2 T4 H3K27ac ChIP rep1 bg_0_1_2_4_dm3 GSM2521736_T4.H3K27ac.ChIP.r1.bedgraph.gz GSM2521734 S2 GSM2521740 GSE95689, S2 cell,UPR-induced S2 cells, T1 H3K27ac ChIP H3K27ac ChIP-Seq dm3, S2 cell S2 T1 H3K27ac ChIP rep1 bg_0_1_2_4_dm3 GSM2521734_T1.H3K27ac.ChIP.r1.bedgraph.gz GSM2521735 S2 GSM2521741 GSE95689, S2 cell,UPR-induced S2 cells, T1 H3K27ac ChIP H3K27ac ChIP-Seq dm3, S2 cell S2 T1 H3K27ac ChIP rep2 bg_0_1_2_4_dm3 GSM2521735_T1.H3K27ac.ChIP.r2.bedgraph.gz GSM2521737 S2 GSM2521743 GSE95689, S2 cell,UPR-induced S2 cells, T4 H3K27ac ChIP H3K27ac ChIP-Seq dm3, S2 cell S2 T4 H3K27ac ChIP rep2 bg_0_1_2_4_dm3 GSM2521737_T4.H3K27ac.ChIP.r2.bedgraph.gz GSM2521746 S2 GSM2521751 GSE95689, S2 cell,UPR-induced S2 cells, T1 Pol-II ChIP POLR2A ChIP-Seq dm3, S2 cell S2 T1 Pol-II ChIP rep1 bg_0_1_2_4_dm3 GSM2521746_T1.Pol2.ChIP.r1.bedgraph.gz GSM2521745 S2 GSM2521750 GSE95689, S2 cell,UPR-induced S2 cells, T0 Pol-II ChIP POLR2A ChIP-Seq dm3, S2 cell S2 T0 Pol-II ChIP rep2 bg_0_1_2_4_dm3 GSM2521745_T0.Pol2.ChIP.r2.bedgraph.gz GSM2521744 S2 GSM2521749 GSE95689, S2 cell,UPR-induced S2 cells, T0 Pol-II ChIP POLR2A ChIP-Seq dm3, S2 cell S2 T0 Pol-II ChIP rep1 bg_0_1_2_4_dm3 GSM2521744_T0.Pol2.ChIP.r1.bedgraph.gz GSM2521747 S2 GSM2521752 GSE95689, S2 cell,UPR-induced S2 cells, T4 Pol-II ChIP POLR2A ChIP-Seq dm3, S2 cell S2 T4 Pol-II ChIP rep1 bg_0_1_2_4_dm3 GSM2521747_T4.Pol2.ChIP.r1.bedgraph.gz GSM2521748 S2 GSM2521753 GSE95689, S2 cell,UPR-induced S2 cells, T4 Pol-II ChIP POLR2A ChIP-Seq dm3, S2 cell S2 T4 Pol-II ChIP rep2 bg_0_1_2_4_dm3 GSM2521748_T4.Pol2.ChIP.r2.bedgraph.gz GSM2278578 S2 GSE85584, in vitro reconstituted chromatin NA, MNase dm3, sample type: purified genomic DNA (from S2 cells) and purified histones (from chicken erythrocytes) InVitro031212_MNaseSeq bd_0_1_2_6_dm3 UsingSRR GSM2491983 S2 GSM2491985 GSE94922, embryonic cells, embryo, S2, Nup98 ChIP-Seq dm3, embryo Nup98_S2 bw_0_1_2_4_dm3 GSM2491983_Nup98_S2.norm.bigWig GSM2332321 S2 GSM2332320 GSE87471, S2 cells 4H6 raised the peptide SRQSPLHPVP in Drosophila Atro ChIP-Seq Drosophila melanogaster genome release 5, Antibody 4H6 raised against the peptide SRQSPLHPVP in Drosophila Atro Atro 2 ChIP-seq bd_0_1_2_6_dm3 UsingSRR GSM2332319 S2 GSM2332318 GSE87471, S2 cells 4H6 raised the peptide SRQSPLHPVP in Drosophila Atro ChIP-Seq Drosophila melanogaster genome release 5, Antibody 4H6 raised against the peptide SRQSPLHPVP in Drosophila Atro Atro 1 ChIP-seq bd_0_1_2_6_dm3 UsingSRR GSM1678912 S2 GSE68677, Embryo 20-24h, S2 (Schneider 2 cells),S2 Cells GRO-seq dm3, S2 (Schneider 2 cells) S2_GROseq_r2 other UsingSRR GSM1678911 S2 GSE68677, Embryo 20-24h, S2 (Schneider 2 cells),S2 Cells GRO-seq dm3, S2 (Schneider 2 cells) S2_GROseq_r1 other UsingSRR GSM2242435 S2 GSM2242436 GSE84595, S2 cells, Y14 ChIP ChIP-Seq BDGP R5/dm3 Assembly, S2 cells Y14 ChIP bd_0_1_2_6_dm3 UsingSRR GSM2202474 S2 GSM2202475 GSE83408,GSE83409, S2 cells, Gcn5 ChIP-Seq dm3, treatment: GFP dsRNA treated S2 cells Gcn5 ChIP-Seq in S2 cells treated with GFP RNAi bd_0_1_2_4_dm3 GSM2202474_Gcn5_GFP_RNAi_macs14_peaks.bed.gz GSM2083082 S2 GSE78984, S2 cells, MNase-Seq dm3, mm9 and hg19, S2 cells S2 whole chromatin rep1 1.5U MNase bg_0_1_2_4_dm3 GSM2083082_s2.mnase_100U_WholeChromatin.r1_bin300.bedGraph.gz GSM2083086 S2 GSE78984, S2 cells, MNase-Seq dm3, mm9 and hg19, S2 cells S2 whole chromatin rep2 1.5U MNase bg_0_1_2_4_dm3 GSM2083086_s2.mnase_100U_WholeChromatin.r2_bin300.bedGraph.gz GSM2083095 S2 GSE78984, S2 cells, MNase-Seq dm3, mm9 and hg19, S2 cells S2 whole chromatin rep1 1.5U MNase additional profile bg_0_1_2_4_dm3 GSM2083095_s2.mnase_1.5U_WholeChromatin.r1_bin300_AdditionalSet.bedGraph.gz GSM2083099 S2 GSE78984, S2 cells, MNase-Seq dm3, mm9 and hg19, S2 cells S2 whole chromatin rep2 1.5U MNase additional set bg_0_1_2_4_dm3 GSM2083099_s2.mnase_1.5U_WholeChromatin.r2_bin300_AdditionalSet.bedGraph.gz GSM1485019 S2 GSM1485023 GSE60686, S2 cells,Drosophila S2 cells PH ChIP-seq ChIP-Seq dm3, genotype/variation: PH-WT PH-WT ChIP-seq (PH-WT_Chip_Rep1) bd_0_1_2_6_dm3 UsingSRR GSM1485020 S2 GSM1485024 GSE60686, S2 cells,Drosophila S2 cells PH ChIP-seq ChIP-Seq dm3, genotype/variation: PH-WT PH-WT ChIP-seq (PH-WT_Chip_Rep2) bd_0_1_2_6_dm3 UsingSRR GSM1356191 S2 GSE56120, late embryonic cells,late embryonic stage cells S2, MNase dm3, late embryonic cells MNase-seq replicate 1 bd_0_1_2_6_dm3 UsingSRR GSM1616472 S2 GSM1616473 GSE66183, Embryo-derived cell-line, S2 cells Late embryonic stage, S2-DRSC, BioTAP-N-Scm ChIP-Seq Flybase reference r5.22, S2-DRSC BioTAP-N-Scm_IP_S2_replicate1 bd_0_1_2_6_dm3 UsingSRR GSM1616474 S2 GSM1616475 GSE66183, Embryo-derived cell-line, S2 cells Late embryonic stage, S2-DRSC, BioTAP-N-Scm ChIP-Seq Flybase reference r5.22, S2-DRSC BioTAP-N-Scm_IP_S2_replicate2 bd_0_1_2_6_dm3 UsingSRR GSM1616476 S2 GSM1616477 GSE66183, Embryo-derived cell-line, S2 cells Late embryonic stage, S2-DRSC, Pc-C-BioTAP ChIP-Seq Flybase reference r5.22, S2-DRSC Pc-C-BioTAP_IP_S2_replicate1 bd_0_1_2_6_dm3 UsingSRR GSM1423051 S2 GSE58955,GSE58957, S2 cells,S2 cell line GRO-seq Release 5, S2 cells Untreated replicate 1 (GRO-seq) other GSM1423051_Untreated_rep1_minus_normalized.bedgraph.gz GSM1423052 S2 GSE58955,GSE58957, S2 cells,S2 cell line GRO-seq Release 5, S2 cells Untreated replicate 2 (GRO-seq) other GSM1423052_Untreated_rep2_minus_normalized.bedgraph.gz GSM1397680 S2 GSE57876, S2 cells,S2 cells_hkCP STARR-Seq dm3, S2 cells hkCP_S2_STARRseq_rep1 other UsingSRR GSM1397681 S2 GSE57876, S2 cells,S2 cells_hkCP STARR-Seq dm3, S2 cells hkCP_S2_STARRseq_rep2 other UsingSRR GSM1397685 S2 GSE57876, S2 cells,S2 cells_dCP STARR-Seq dm3, S2 cells dCP_S2_STARRseq_rep1 other UsingSRR GSM1397686 S2 GSE57876, S2 cells,S2 cells_dCP STARR-Seq dm3, S2 cells dCP_S2_STARRseq_rep2 other UsingSRR GSM1513707 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells NipB_S2_STARRseq_rep1 other UsingSRR GSM1513706 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells X16_S2_STARRseq_rep2 other UsingSRR GSM1513708 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells NipB_S2_STARRseq_rep2 other UsingSRR GSM1513705 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells X16_S2_STARRseq_rep1 other UsingSRR GSM1513709 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells pnr_S2_STARRseq other UsingSRR GSM1513717 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells X16_BAC_S2_STARRseq other UsingSRR GSM1513715 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells DSCP_BAC_S2_STARRseq other UsingSRR GSM1513714 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells RpS12_BAC_S2_STARRseq other UsingSRR GSM1513718 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells NipB_BAC_S2_STARRseq other UsingSRR GSM1513720 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells hsp70_BAC_S2_STARRseq other UsingSRR GSM1513721 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells eve_BAC_S2_STARRseq other UsingSRR GSM1513722 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells evelong_BAC_S2_STARRseq other UsingSRR GSM1513719 S2 GSE57876, S2 cells, STARR-Seq dm3, S2 cells pnr_BAC_S2_STARRseq other UsingSRR GSM1154837 S2 GSE47691, S2 cells, DNase dm3, S2 cells S2_DHSseq_no_ecd_24hrs_rep1 bd_0_1_2_7_dm3 GSM1154837_S2_DHSseq_no_ecd_rep1.peaks.txt.gz GSM1154838 S2 GSE47691, S2 cells, DNase dm3, S2 cells S2_DHSseq_no_ecd_24hrs_rep2 bd_0_1_2_7_dm3 GSM1154838_S2_DHSseq_no_ecd_rep2.peaks.txt.gz GSM1357046 S2 GSE47691, S2 cells, STARR-Seq dm3, S2 cells S2_STARRseq_no_ecd_rep2 other GSM1357046_S2_STARRseq_no_ecd_rep2.peaks.txt.gz GSM1357045 S2 GSE47691, S2 cells, STARR-Seq dm3, S2 cells S2_STARRseq_no_ecd_rep1 other GSM1357045_S2_STARRseq_no_ecd_rep1.peaks.txt.gz GSM1357049 S2 GSE47691, S2 cells,whole genome library STARR-Seq dm3, S2 cells S2_STARRseq_input other UsingSRR GSM1278639 S2 GSM1278640 GSE52887,GSE52962, Late embryonic derived S2 cells, Beaf32 ChIP-Seq Flybase release 5.41 GCA_000001625.2, Late embryonic derived S2 cells Beaf-32 bd_0_1_2_6_dm3 UsingSRR GSM967309 S2 GSM967310 GSE39393, embryonic cells,S2R+ cells rabbit Dp1 ChIP-Seq embryonic cells Dp1_ChIPSeq-replicate2 bd_0_1_2_6_dm3 UsingSRR GSM967308 S2 GSM967310 GSE39393, embryonic cells,S2R+ cells rabbit Dp1 ChIP-Seq embryonic cells Dp1_ChIPSeq_replicate_1 bd_0_1_2_4_dm3 GSM967308_dp1_peaks.bed.gz GSM1200479 S2 GSE49526, late embryonic cells,late embryonic stage cells S2, MNase dm3, late embryonic cells MNase-seq replicate 1 bd_0_1_2_6_dm3 UsingSRR GSM1160310 S2 GSE47795, S2,Pol II ChIP POLR2A ChIP-Seq S2 Pol2ChIP_Ctl_(20121019_6_4) bd_0_1_2_6_dm3 UsingSRR GSM1925981 S2 GSE47795, S2,Nuc Control MNase S2 Nuc_Ctl_(20121019_7_4) bd_0_1_2_6_dm3 UsingSRR GSM1209198 S2 GSM1209203 GSE49899, S2 S2, transcription CG8478, KW1-CG8478-D1, Aviva ChIP-Seq dm3, S2 CG8478_ChIP-seq, replicate1 bd_0_1_2_6_dm3 UsingSRR GSM1209199 S2 GSM1209203 GSE49899, S2 S2, transcription CG8478, KW1-CG8478-D1, Aviva ChIP-Seq dm3, S2 CG8478_ChIP-seq, replicate2 bd_0_1_2_6_dm3 UsingSRR GSM1162760 S2 GSM1162762 GSE47938, S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab,S2 cell culture Ice1 ChIP-Seq UCSC hg19 and UCSC dm3, S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab fly_Ice1_nont_ChIP_0 bd_0_1_2_non_dm3 GSM1162760_NT_ice504crude_91012_peaks.bed.gz GSM1162761 S2 GSM1162762 GSE47938, S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab,S2 cell culture POLR2A ChIP-Seq UCSC hg19 and UCSC dm3, S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab fly_PolII_nont_ChIP_0 bd_0_1_2_non_dm3 GSM1162761_NT_PolII_91012_peaks.bed.gz GSM1162771 S2 GSM1162772 GSE47938, S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab,S2 cell culture POLR2A ChIP-Seq UCSC hg19 and UCSC dm3, S2; Schneider's Drosophila Line 2; Marco Blanchette's Lab fly_PolII_nont_ChIP_3 bd_0_1_2_non_dm3 GSM1162771_NT_PolII_4412_peaks.bed.gz GSM1000400 S2 GSE40739, S2 cells, STARR-Seq dm3, S2 cells S2 STARR-seq biological replicate 1 other GSM1000400_S2_STARRseq_rep1.peaks.txt.gz GSM1000401 S2 GSE40739, S2 cells, STARR-Seq dm3, S2 cells S2 STARR-seq biological replicate 2 other GSM1000401_S2_STARRseq_rep2.peaks.txt.gz GSM1000407 S2 GSE40739, S2 cells, DNase dm3, S2 cells S2 DHS-seq biological replicate 2 bd_0_1_2_7_dm3 GSM1000407_S2_DHSseq_rep2.peaks.txt.gz GSM1000406 S2 GSE40739, S2 cells, DNase dm3, S2 cells S2 DHS-seq biological replicate 1 bd_0_1_2_7_dm3 GSM1000406_S2_DHSseq_rep1.peaks.txt.gz GSM1028090 S2 GSM1028095 GSE41950, S2 late embryonic cells,S2 cells Rrp6 ChIP-Seq dm3, Rrp6 tech_rep1_Rrp6_S2 [ChIP-Seq] bd_0_1_2_6_dm3 UsingSRR GSM1028091 S2 GSM1028096 GSE41950, S2 late embryonic cells,S2 cells Rrp6 ChIP-Seq dm3, Rrp6 tech_rep2_Rrp6_S2 [ChIP-Seq] bd_0_1_2_6_dm3 UsingSRR GSM1028092 S2 GSM1028095 GSE41950, S2 late embryonic cells,S2 cells Rrp40 ChIP-Seq dm3, Rrp40 tech_rep1_Rrp40_S2 [ChIP-Seq] bd_0_1_2_6_dm3 UsingSRR GSM1028093 S2 GSM1028096 GSE41950, S2 late embryonic cells,S2 cells Rrp40 ChIP-Seq dm3, Rrp40 tech_rep2_Rrp40_S2 [ChIP-Seq] bd_0_1_2_6_dm3 UsingSRR GSM1028094 S2 GSM1028095 GSE41950, S2 late embryonic cells,S2 cells Su ChIP-Seq dm3, Su(Hw) Suhw_S2 [ChIP-Seq] bd_0_1_2_6_dm3 UsingSRR GSM929147 S2 GSM929160 GSE37864,GSE37865, S2,MSL1 ChIP-Seq rabbit MSL1, crude serum ChIP-Seq dm3, S2 msl1_2 bd_0_1_2_6_dm3 UsingSRR GSM929146 S2 GSM929159 GSE37864,GSE37865, S2,MSL1 ChIP-Seq rabbit MSL1, crude serum ChIP-Seq dm3, S2 msl1_1 bd_0_1_2_6_dm3 UsingSRR GSM929149 S2 GSM929160 GSE37864,GSE37865, S2,MSL2 ChIP-Seq rabbit MSL2, crude serum ChIP-Seq dm3, S2 msl2_2 bd_0_1_2_6_dm3 UsingSRR GSM929151 S2 GSM929159 GSE37864,GSE37865, S2,MSL3 ChIP-Seq rabbit MSL3, crude serum ChIP-Seq dm3, S2 msl3_1 bd_0_1_2_6_dm3 UsingSRR GSM929152 S2 GSM929160 GSE37864,GSE37865, S2,MSL3 ChIP-Seq rabbit MSL3, crude serum ChIP-Seq dm3, S2 msl3_2 bd_0_1_2_6_dm3 UsingSRR GSM929150 S2 GSM929161 GSE37864,GSE37865, S2,MSL2 ChIP-Seq rabbit MSL2, crude serum ChIP-Seq dm3, S2 msl2_3 bd_0_1_2_6_dm3 UsingSRR GSM929148 S2 GSM929159 GSE37864,GSE37865, S2,MSL2 ChIP-Seq rabbit MSL2, crude serum ChIP-Seq dm3, S2 msl2_1 bd_0_1_2_6_dm3 UsingSRR GSM929156 S2 GSM929160 GSE37864,GSE37865, S2,MLE ChIP-Seq monoclonal rat 6E11 ChIP-Seq dm3, S2 mle_2 bd_0_1_2_6_dm3 UsingSRR GSM929154 S2 GSM929160 GSE37864,GSE37865, S2,MOF ChIP-Seq rabbit MOF SA 4897, crude serum ChIP-Seq dm3, S2 mof_2 bd_0_1_2_6_dm3 UsingSRR GSM929153 S2 GSM929159 GSE37864,GSE37865, S2,MOF ChIP-Seq rabbit MOF SA 4897, crude serum ChIP-Seq dm3, S2 mof_1 bd_0_1_2_6_dm3 UsingSRR GSM929155 S2 GSM929159 GSE37864,GSE37865, S2,MLE ChIP-Seq monoclonal rat 6E11 ChIP-Seq dm3, S2 mle_1 bd_0_1_2_6_dm3 UsingSRR GSM1017402 S2 GSM1017396 GSE41440, S2,Schneider's Drosophila Line 2; S2 cells ¦Á-LPT ChIP-Seq UCSC dm3; UCSC mm9, S2 WT_LPT470_3 bd_0_1_2_8_dm3 GSM1017402_WT_LPT470_3_peaks.tab.gz GSM1017400 S2 GSM1017399 GSE41440, S2,Schneider's Drosophila Line 2; S2 cells ¦Á-Trr ChIP-Seq UCSC dm3; UCSC mm9, S2 WT_Trr_6 bd_0_1_2_8_dm3 GSM1017400_WT_Trr_6_peaks.tab.gz GSM1017401 S2 GSM1017396 GSE41440, S2,Schneider's Drosophila Line 2; S2 cells ¦Á-dUTX ChIP-Seq UCSC dm3; UCSC mm9, S2 WT_dUTX663_3 bd_0_1_2_8_dm3 GSM1017401_WT_dUTX663_3_peaks.tab.gz GSM1017404 S2 GSM1017394 GSE41440, S2,Schneider's Drosophila Line 2; S2 cells H3K27ac ChIP-Seq UCSC dm3; UCSC mm9, S2 WT_H3K27ac_1 bd_0_1_2_8_dm3 GSM1017404_WT_H3K27ac_1_peaks.tab.gz GSM1017403 S2 GSM1017398 GSE41440, S2,Schneider's Drosophila Line 2; S2 cells POLR2A ChIP-Seq UCSC dm3; UCSC mm9, S2 WT_RNAPolII_5 bd_0_1_2_8_dm3 GSM1017403_WT_RNAPolII_5_peaks.tab.gz GSM1017405 S2 GSM1017395 GSE41440, S2,Schneider's Drosophila Line 2; S2 cells H3K27ac ChIP-Seq UCSC dm3; UCSC mm9, S2 WT_H3K27ac_2 bd_0_1_2_6_dm3 UsingSRR GSM1017408 S2 GSM1017397 GSE41440, S2,Schneider's Drosophila Line 2; S2 cells H3K4me1 ChIP-Seq UCSC dm3; UCSC mm9, S2 WT_H3K4me1_4 bd_0_1_2_6_dm3 UsingSRR GSM1017407 S2 GSM1017394 GSE41440, S2,Schneider's Drosophila Line 2; S2 cells H3K4me1 ChIP-Seq UCSC dm3; UCSC mm9, S2 WT_H3K4me1_1 bd_0_1_2_8_dm3 GSM1017407_WT_H3K4me1_1_peaks.tab.gz GSM802113 S2 GSE32404, S2 cells, Input DNA FAIRE S2 cells S2 Mock RNAi FAIRE-chip bd_0_1_2_6_dm3 UsingSRR GSM802112 S2 GSE32404, S2 cells, Input DNA FAIRE S2 cells S2 FAIRE FAIRE-chip bd_0_1_2_6_dm3 UsingSRR GSM802124 S2 GSE32404, S2 cells, Input DNA FAIRE S2 cells embryo 0-1h FAIRE-chip bd_0_1_2_6_dm3 UsingSRR GSM763041 S2 GSE30755, S2 cells,total nuclei MNase-Seq S2 cells Total_control_(Nuc1_20110223_1) bg_0_1_2_4_dm3 GSM763041.bedgraph.gz GSM1293955 S2 GSE30755, S2 cells,total nuclei MNase S2 cells Total_DRB_(Nuc3_20110223_3) bg_0_1_2_4_dm3 GSM1293955_Total_DRB.bedgraph.gz GSM1293956 S2 GSE30755, S2 cells,total nuclei MNase S2 cells Total_DRB_HS_(Nuc4_20110223_4) bg_0_1_2_4_dm3 GSM1293956_Total_DRB_HS.bedgraph.gz GSM1293957 S2 GSE30755, S2 cells,total nuclei MNase S2 cells Total_HS_(Nuc2_20110223_2) bg_0_1_2_4_dm3 GSM1293957_Total_HS.bedgraph.gz GSM550123 S2 GSE20472,GSE22119, S2 cells,Nuc_untreated MNase S2 cells Nuc_untreated_1 bd_0_1_2_6_dm3 UsingSRR GSM410160 S2 GSE16344, S2 cells,Drosophila S2 cell WT, DNase WT Drosophila-S2-DNAseq bd_0_1_2_6_dm3 UsingSRR GSM463297 S2 GSE18643, Drosophila Schneider 2 cells,S2 cells Oregon R, POLR2A ChIP-Seq Oregon R S2_Rpb3_S2_Pol_II_ChIPSeq_rep1+rep2 bg_0_1_2_4_dm3 GSM463297_Nechaev09_S2_ChIP-seq_both.bedgraph.gz